From 01fb17950b680d467ce42c4f4a792cabf4652426 Mon Sep 17 00:00:00 2001 From: Alan Orth Date: Wed, 8 Nov 2023 08:20:31 +0300 Subject: [PATCH] Add notes --- content/posts/2023-11.md | 70 +++++ docs/2015-11/index.html | 6 +- docs/2015-12/index.html | 6 +- docs/2016-01/index.html | 6 +- docs/2016-02/index.html | 6 +- docs/2016-03/index.html | 6 +- docs/2016-04/index.html | 6 +- docs/2016-05/index.html | 6 +- docs/2016-06/index.html | 6 +- docs/2016-07/index.html | 6 +- docs/2016-08/index.html | 6 +- docs/2016-09/index.html | 6 +- docs/2016-10/index.html | 6 +- docs/2016-11/index.html | 6 +- docs/2016-12/index.html | 6 +- docs/2017-01/index.html | 6 +- docs/2017-02/index.html | 6 +- docs/2017-03/index.html | 6 +- docs/2017-04/index.html | 6 +- docs/2017-05/index.html | 6 +- docs/2017-06/index.html | 6 +- docs/2017-07/index.html | 6 +- docs/2017-08/index.html | 6 +- docs/2017-09/index.html | 6 +- docs/2017-10/index.html | 6 +- docs/2017-11/index.html | 6 +- docs/2017-12/index.html | 6 +- docs/2018-01/index.html | 6 +- docs/2018-02/index.html | 6 +- docs/2018-03/index.html | 6 +- docs/2018-04/index.html | 6 +- docs/2018-05/index.html | 6 +- docs/2018-06/index.html | 6 +- docs/2018-07/index.html | 6 +- docs/2018-08/index.html | 6 +- docs/2018-09/index.html | 6 +- docs/2018-10/index.html | 6 +- docs/2018-11/index.html | 6 +- docs/2018-12/index.html | 6 +- docs/2019-01/index.html | 6 +- docs/2019-02/index.html | 6 +- docs/2019-03/index.html | 6 +- docs/2019-04/index.html | 6 +- docs/2019-05/index.html | 6 +- docs/2019-06/index.html | 6 +- docs/2019-07/index.html | 6 +- docs/2019-08/index.html | 6 +- docs/2019-09/index.html | 6 +- docs/2019-10/index.html | 6 +- docs/2019-11/index.html | 6 +- docs/2019-12/index.html | 6 +- docs/2020-01/index.html | 6 +- docs/2020-02/index.html | 6 +- docs/2020-03/index.html | 6 +- docs/2020-04/index.html | 6 +- docs/2020-05/index.html | 6 +- docs/2020-06/index.html | 6 +- docs/2020-07/index.html | 6 +- docs/2020-08/index.html | 6 +- docs/2020-09/index.html | 6 +- docs/2020-10/index.html | 6 +- docs/2020-11/index.html | 6 +- docs/2020-12/index.html | 6 +- docs/2021-01/index.html | 6 +- docs/2021-02/index.html | 6 +- docs/2021-03/index.html | 6 +- docs/2021-04/index.html | 6 +- docs/2021-05/index.html | 6 +- docs/2021-06/index.html | 6 +- docs/2021-07/index.html | 6 +- docs/2021-08/index.html | 6 +- docs/2021-09/index.html | 6 +- docs/2021-10/index.html | 6 +- docs/2021-11/index.html | 6 +- docs/2021-12/index.html | 6 +- docs/2022-01/index.html | 6 +- docs/2022-02/index.html | 6 +- docs/2022-03/index.html | 6 +- docs/2022-04/index.html | 6 +- docs/2022-05/index.html | 6 +- docs/2022-06/index.html | 6 +- docs/2022-07/index.html | 6 +- docs/2022-08/index.html | 6 +- docs/2022-09/index.html | 6 +- docs/2022-10/index.html | 6 +- docs/2022-11/index.html | 6 +- docs/2022-12/index.html | 6 +- docs/2023-01/index.html | 6 +- docs/2023-02/index.html | 6 +- docs/2023-03/index.html | 6 +- docs/2023-04/index.html | 6 +- docs/2023-05/index.html | 6 +- docs/2023-06/index.html | 6 +- docs/2023-07/index.html | 6 +- docs/2023-08/index.html | 6 +- docs/2023-09/index.html | 6 +- docs/2023-10/index.html | 29 +- docs/2023-11/index.html | 298 +++++++++++++++++++++ docs/404.html | 6 +- docs/categories/index.html | 10 +- docs/categories/index.xml | 7 +- docs/categories/notes/index.html | 64 ++--- docs/categories/notes/index.xml | 174 ++---------- docs/categories/notes/page/2/index.html | 60 ++--- docs/categories/notes/page/3/index.html | 61 +++-- docs/categories/notes/page/4/index.html | 68 +++-- docs/categories/notes/page/5/index.html | 79 +++--- docs/categories/notes/page/6/index.html | 80 +++--- docs/categories/notes/page/7/index.html | 63 +++-- docs/categories/notes/page/8/index.html | 29 +- docs/cgiar-library-migration/index.html | 6 +- docs/cgspace-cgcorev2-migration/index.html | 6 +- docs/cgspace-dspace6-upgrade/index.html | 6 +- docs/index.html | 66 ++--- docs/index.xml | 220 ++------------- docs/page/10/index.html | 40 ++- docs/page/2/index.html | 62 ++--- docs/page/3/index.html | 63 +++-- docs/page/4/index.html | 70 +++-- docs/page/5/index.html | 81 +++--- docs/page/6/index.html | 82 +++--- docs/page/7/index.html | 65 +++-- docs/page/8/index.html | 49 ++-- docs/page/9/index.html | 58 ++-- docs/posts/index.html | 66 ++--- docs/posts/index.xml | 220 ++------------- docs/posts/page/10/index.html | 40 ++- docs/posts/page/2/index.html | 62 ++--- docs/posts/page/3/index.html | 63 +++-- docs/posts/page/4/index.html | 70 +++-- docs/posts/page/5/index.html | 81 +++--- docs/posts/page/6/index.html | 82 +++--- docs/posts/page/7/index.html | 65 +++-- docs/posts/page/8/index.html | 49 ++-- docs/posts/page/9/index.html | 58 ++-- docs/robots.txt | 3 +- docs/sitemap.xml | 15 +- docs/tags/index.html | 6 +- docs/tags/index.xml | 7 +- docs/tags/migration/index.html | 6 +- docs/tags/migration/index.xml | 9 +- docs/tags/notes/index.html | 6 +- docs/tags/notes/index.xml | 49 +--- docs/tags/notes/page/2/index.html | 6 +- docs/tags/notes/page/3/index.html | 6 +- 145 files changed, 1724 insertions(+), 1787 deletions(-) create mode 100644 docs/2023-11/index.html diff --git a/content/posts/2023-11.md b/content/posts/2023-11.md index 800926db0..a768a6459 100644 --- a/content/posts/2023-11.md +++ b/content/posts/2023-11.md @@ -21,4 +21,74 @@ categories: ["Notes"] - There are ~1,700 of them and date back to as early as 2008 - I did a quick cleanup of the metadata export from Slideshare (including tagging with some AGROVOC in OpenRefine) and uploaded to DSpace Test +## 2023-11-03 + +- A little bit of work on the CGIAR Climate Change Synthesis +- Discuss some CGSpace migration plans with Leigh from IFPRI + - For their Slideshare content we agreed: + - Exclude private + - Exclude deleted + - Exclude non presentation types + - Exclude duplicates within the collection for now until we can sort them out + - That leaves about 1,500 items out of the 1,700 +- I did a duplicate check against CGSpace and found 44 items with 1.0 similarity so I removed those + +## 2023-11-04 + +- Export CGSpace to check for missing Initiative collection mappings +- I ran through the list of potential duplicates on the IFPRI Slideshare presentations + +## 2023-11-05 + +- Work with Salem to migrate AReS to the new version + +## 2023-11-07 + +- DSpace 7 Test went down and there is very high load on the server + - I saw very high load from Java but didn't have time to check exactly what was wrong so I just rebooted the host + - A few hours after restarting the system went down again, with very high load from Java again + - I see lots of messages like this in the Tomcat log: + +``` +tomcat9[732]: [9955.662s][info ][gc] GC(6291) Pause Full (G1 Compaction Pause) 4085M->4080M(4096M) 677.251ms +tomcat9[732]: [9955.662s][info ][gc] GC(6290) Concurrent Mark Cycle 677.558ms +tomcat9[732]: [9955.666s][info ][gc] GC(6292) To-space exhausted +``` + +- I see some messages in `dspace.log` about heap space: + +``` +Caused by: java.lang.OutOfMemoryError: Java heap space +``` + +- I will increase Tomcat's heap from 4096m to 5120m + - A few hours later it happened again, so I increased the heap from 5120m to 6144m + - Not sure what's going on today... +- I tested moving the CGIAR Fund Council community to the CGIAR historic archive on DSpace Test: + +```console +$ dspace community-filiator -r -p 10568/83389 -c 10947/2516 +$ dspace community-filiator -s -p 10947/2515 -c 10947/2516 +$ dspace index-discovery -r 10947/2516 +$ dspace index-discovery -r 10947/2515 +$ dspace index-discovery -r 10568/83389 +$ dspace index-discovery +``` + +- I think this is the minimal we can do to avoid a full Discovery reindex which is very expensive +- I helped Maria resize some massive PDFs for upload to CGSpace using GhostScript prepress mode as I had done before in [September, 2023]({{< relref "2023-09.md" >}}), + +## 2023-11-08 + +- DSpace 7 Test has very high load again and I see more Java heap space errors in the log + +```console +# grep -c 'Caused by: java.lang.OutOfMemoryError: Java heap space' /home/dspace7/log/dspace.log-2023-11-07 +35 +# grep -c 'Caused by: java.lang.OutOfMemoryError: Java heap space' /home/dspace7/log/dspace.log +7 +``` + +- I don't know what is happening... I will increase the heap size from 6144m to 7168m again... + diff --git a/docs/2015-11/index.html b/docs/2015-11/index.html index 43d64b3bb..723718652 100644 --- a/docs/2015-11/index.html +++ b/docs/2015-11/index.html @@ -34,7 +34,7 @@ Last week I had increased the limit from 30 to 60, which seemed to help, but now $ psql -c 'SELECT * from pg_stat_activity;' | grep idle | grep -c cgspace 78 "/> - + @@ -242,6 +242,8 @@ db.statementpool = true
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -250,8 +252,6 @@ db.statementpool = true
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2015-12/index.html b/docs/2015-12/index.html index 3384683a7..192a4abdf 100644 --- a/docs/2015-12/index.html +++ b/docs/2015-12/index.html @@ -36,7 +36,7 @@ Replace lzop with xz in log compression cron jobs on DSpace Test—it uses less -rw-rw-r-- 1 tomcat7 tomcat7 387K Nov 18 23:59 dspace.log.2015-11-18.lzo -rw-rw-r-- 1 tomcat7 tomcat7 169K Nov 18 23:59 dspace.log.2015-11-18.xz "/> - + @@ -264,6 +264,8 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -272,8 +274,6 @@ $ curl -o /dev/null -s -w %{time_total}\\n https://cgspace.cgiar.org/rest/handle
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2016-01/index.html b/docs/2016-01/index.html index 47b33464f..34a913252 100644 --- a/docs/2016-01/index.html +++ b/docs/2016-01/index.html @@ -28,7 +28,7 @@ Move ILRI collection 10568/12503 from 10568/27869 to 10568/27629 using the move_ I realized it is only necessary to clear the Cocoon cache after moving collections—rather than reindexing—as no metadata has changed, and therefore no search or browse indexes need to be updated. Update GitHub wiki for documentation of maintenance tasks. "/> - + @@ -200,6 +200,8 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} ; | sor
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -208,8 +210,6 @@ $ find SimpleArchiveForBio/ -iname “*.pdf” -exec basename {} ; | sor
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2016-02/index.html b/docs/2016-02/index.html index 18e9761e9..b4ef5613f 100644 --- a/docs/2016-02/index.html +++ b/docs/2016-02/index.html @@ -38,7 +38,7 @@ I noticed we have a very interesting list of countries on CGSpace: Not only are there 49,000 countries, we have some blanks (25)… Also, lots of things like “COTE D`LVOIRE” and “COTE D IVOIRE” "/> - + @@ -378,6 +378,8 @@ Bitstream: tést señora alimentación.pdf
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -386,8 +388,6 @@ Bitstream: tést señora alimentación.pdf
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2016-03/index.html b/docs/2016-03/index.html index 74d27289e..18b8bb66c 100644 --- a/docs/2016-03/index.html +++ b/docs/2016-03/index.html @@ -28,7 +28,7 @@ Looking at issues with author authorities on CGSpace For some reason we still have the index-lucene-update cron job active on CGSpace, but I’m pretty sure we don’t need it as of the latest few versions of Atmire’s Listings and Reports module Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Java JDK 1.7 to match environment on CGSpace server "/> - + @@ -316,6 +316,8 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -324,8 +326,6 @@ Reinstall my local (Mac OS X) DSpace stack with Tomcat 7, PostgreSQL 9.3, and Ja
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2016-04/index.html b/docs/2016-04/index.html index d6673069d..a73eaaf22 100644 --- a/docs/2016-04/index.html +++ b/docs/2016-04/index.html @@ -32,7 +32,7 @@ After running DSpace for over five years I’ve never needed to look in any This will save us a few gigs of backup space we’re paying for on S3 Also, I noticed the checker log has some errors we should pay attention to: "/> - + @@ -495,6 +495,8 @@ dspace.log.2016-04-27:7271
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -503,8 +505,6 @@ dspace.log.2016-04-27:7271
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2016-05/index.html b/docs/2016-05/index.html index 3840bac55..d5428171d 100644 --- a/docs/2016-05/index.html +++ b/docs/2016-05/index.html @@ -34,7 +34,7 @@ There are 3,000 IPs accessing the REST API in a 24-hour period! # awk '{print $1}' /var/log/nginx/rest.log | uniq | wc -l 3168 "/> - + @@ -371,6 +371,8 @@ sys 0m20.540s
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -379,8 +381,6 @@ sys 0m20.540s
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2016-06/index.html b/docs/2016-06/index.html index 95b466f1d..eaf55aac8 100644 --- a/docs/2016-06/index.html +++ b/docs/2016-06/index.html @@ -34,7 +34,7 @@ This is their publications set: http://ebrary.ifpri.org/oai/oai.php?verb=ListRec You can see the others by using the OAI ListSets verb: http://ebrary.ifpri.org/oai/oai.php?verb=ListSets Working on second phase of metadata migration, looks like this will work for moving CPWF-specific data in dc.identifier.fund to cg.identifier.cpwfproject and then the rest to dc.description.sponsorship "/> - + @@ -409,6 +409,8 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -417,8 +419,6 @@ $ ./delete-metadata-values.py -f dc.contributor.corporate -i Corporate-Authors-D
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2016-07/index.html b/docs/2016-07/index.html index 9260e5fbf..1ba1ff09f 100644 --- a/docs/2016-07/index.html +++ b/docs/2016-07/index.html @@ -44,7 +44,7 @@ dspacetest=# select text_value from metadatavalue where metadata_field_id=3 and In this case the select query was showing 95 results before the update "/> - + @@ -325,6 +325,8 @@ discovery.index.authority.ignore-variants=true
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -333,8 +335,6 @@ discovery.index.authority.ignore-variants=true
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2016-08/index.html b/docs/2016-08/index.html index 7e04dbb66..a0ca31568 100644 --- a/docs/2016-08/index.html +++ b/docs/2016-08/index.html @@ -42,7 +42,7 @@ $ git checkout -b 55new 5_x-prod $ git reset --hard ilri/5_x-prod $ git rebase -i dspace-5.5 "/> - + @@ -389,6 +389,8 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/bin
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -397,8 +399,6 @@ $ JAVA_OPTS="-Dfile.encoding=UTF-8 -Xmx512m" /home/cgspace.cgiar.org/bin
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2016-09/index.html b/docs/2016-09/index.html index 666455fe0..7f7fded1f 100644 --- a/docs/2016-09/index.html +++ b/docs/2016-09/index.html @@ -34,7 +34,7 @@ It looks like we might be able to use OUs now, instead of DCs: $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b "dc=cgiarad,dc=org" -D "admigration1@cgiarad.org" -W "(sAMAccountName=admigration1)" "/> - + @@ -606,6 +606,8 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -614,8 +616,6 @@ $ ./delete-metadata-values.py -i ilrisubjects-delete-13.csv -f cg.subject.ilri -
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2016-10/index.html b/docs/2016-10/index.html index d92ca3dec..7fed5c596 100644 --- a/docs/2016-10/index.html +++ b/docs/2016-10/index.html @@ -42,7 +42,7 @@ I exported a random item’s metadata as CSV, deleted all columns except id 0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X "/> - + @@ -372,6 +372,8 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'h
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -380,8 +382,6 @@ dspace=# update metadatavalue set text_value = regexp_replace(text_value, 'h
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2016-11/index.html b/docs/2016-11/index.html index 2fe26713f..134fd13b9 100644 --- a/docs/2016-11/index.html +++ b/docs/2016-11/index.html @@ -26,7 +26,7 @@ Add dc.type to the output options for Atmire’s Listings and Reports module Add dc.type to the output options for Atmire’s Listings and Reports module (#286) "/> - + @@ -548,6 +548,8 @@ org.dspace.discovery.SearchServiceException: Error executing query
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -556,8 +558,6 @@ org.dspace.discovery.SearchServiceException: Error executing query
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2016-12/index.html b/docs/2016-12/index.html index 1c08bbf9a..9d192b03d 100644 --- a/docs/2016-12/index.html +++ b/docs/2016-12/index.html @@ -46,7 +46,7 @@ I see thousands of them in the logs for the last few months, so it’s not r I’ve raised a ticket with Atmire to ask Another worrying error from dspace.log is: "/> - + @@ -784,6 +784,8 @@ $ exit
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -792,8 +794,6 @@ $ exit
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2017-01/index.html b/docs/2017-01/index.html index c3815ab7e..609dd8d07 100644 --- a/docs/2017-01/index.html +++ b/docs/2017-01/index.html @@ -28,7 +28,7 @@ I checked to see if the Solr sharding task that is supposed to run on January 1s I tested on DSpace Test as well and it doesn’t work there either I asked on the dspace-tech mailing list because it seems to be broken, and actually now I’m not sure if we’ve ever had the sharding task run successfully over all these years "/> - + @@ -369,6 +369,8 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -377,8 +379,6 @@ $ gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2017-02/index.html b/docs/2017-02/index.html index e10f1e31f..a5248f6ee 100644 --- a/docs/2017-02/index.html +++ b/docs/2017-02/index.html @@ -50,7 +50,7 @@ DELETE 1 Create issue on GitHub to track the addition of CCAFS Phase II project tags (#301) Looks like we’ll be using cg.identifier.ccafsprojectpii as the field name "/> - + @@ -423,6 +423,8 @@ COPY 1968
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -431,8 +433,6 @@ COPY 1968
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2017-03/index.html b/docs/2017-03/index.html index 95ea61164..2197115b3 100644 --- a/docs/2017-03/index.html +++ b/docs/2017-03/index.html @@ -54,7 +54,7 @@ Interestingly, it seems DSpace 4.x’s thumbnails were sRGB, but forcing reg $ identify ~/Desktop/alc_contrastes_desafios.jpg /Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600+0+0 8-bit CMYK 168KB 0.000u 0:00.000 "/> - + @@ -355,6 +355,8 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -363,8 +365,6 @@ $ ./delete-metadata-values.py -i Investors-Delete-121.csv -f dc.description.spon
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2017-04/index.html b/docs/2017-04/index.html index 553afa903..137c515ae 100644 --- a/docs/2017-04/index.html +++ b/docs/2017-04/index.html @@ -40,7 +40,7 @@ Testing the CMYK patch on a collection with 650 items: $ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Thumbnail" -v >& /tmp/filter-media-cmyk.txt "/> - + @@ -585,6 +585,8 @@ $ gem install compass -v 1.0.3
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -593,8 +595,6 @@ $ gem install compass -v 1.0.3
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2017-05/index.html b/docs/2017-05/index.html index f70d3680e..0d23a7758 100644 --- a/docs/2017-05/index.html +++ b/docs/2017-05/index.html @@ -18,7 +18,7 @@ - + @@ -391,6 +391,8 @@ UPDATE 187
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -399,8 +401,6 @@ UPDATE 187
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2017-06/index.html b/docs/2017-06/index.html index d0bdfd544..155cc8e29 100644 --- a/docs/2017-06/index.html +++ b/docs/2017-06/index.html @@ -18,7 +18,7 @@ - + @@ -270,6 +270,8 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace import
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -278,8 +280,6 @@ $ JAVA_OPTS="-Xmx1024m -Dfile.encoding=UTF-8" [dspace]/bin/dspace import
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2017-07/index.html b/docs/2017-07/index.html index 0a3e3b2db..24785d365 100644 --- a/docs/2017-07/index.html +++ b/docs/2017-07/index.html @@ -36,7 +36,7 @@ Merge changes for WLE Phase II theme rename (#329) Looking at extracting the metadata registries from ICARDA’s MEL DSpace database so we can compare fields with CGSpace We can use PostgreSQL’s extended output format (-x) plus sed to format the output into quasi XML: "/> - + @@ -275,6 +275,8 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -283,8 +285,6 @@ delete from metadatavalue where resource_type_id=2 and metadata_field_id=235 and
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2017-08/index.html b/docs/2017-08/index.html index 5c9faeaf4..ed4d6dcab 100644 --- a/docs/2017-08/index.html +++ b/docs/2017-08/index.html @@ -60,7 +60,7 @@ This was due to newline characters in the dc.description.abstract column, which I exported a new CSV from the collection on DSpace Test and then manually removed the characters in vim using g/^$/d Then I cleaned up the author authorities and HTML characters in OpenRefine and sent the file back to Abenet "/> - + @@ -517,6 +517,8 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -525,8 +527,6 @@ org.apache.commons.dbcp.SQLNestedException: Cannot get a connection, pool error
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2017-09/index.html b/docs/2017-09/index.html index cb8491bd3..3e0fca58f 100644 --- a/docs/2017-09/index.html +++ b/docs/2017-09/index.html @@ -32,7 +32,7 @@ Linode sent an alert that CGSpace (linode18) was using 261% CPU for the past two Ask Sisay to clean up the WLE approvers a bit, as Marianne’s user account is both in the approvers step as well as the group "/> - + @@ -659,6 +659,8 @@ Cert Status: good
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -667,8 +669,6 @@ Cert Status: good
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2017-10/index.html b/docs/2017-10/index.html index 7c936cb86..2ddcae25b 100644 --- a/docs/2017-10/index.html +++ b/docs/2017-10/index.html @@ -34,7 +34,7 @@ http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336 There appears to be a pattern but I’ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine Add Katherine Lutz to the groups for content submission and edit steps of the CGIAR System collections "/> - + @@ -443,6 +443,8 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -451,8 +453,6 @@ session_id=6C30F10B4351A4ED83EC6ED50AFD6B6A
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2017-11/index.html b/docs/2017-11/index.html index d6df4d3f6..43db2fc8f 100644 --- a/docs/2017-11/index.html +++ b/docs/2017-11/index.html @@ -48,7 +48,7 @@ Generate list of authors on CGSpace for Peter to go through and correct: dspace=# \copy (select distinct text_value, count(*) as count from metadatavalue where metadata_field_id = (select metadata_field_id from metadatafieldregistry where element = 'contributor' and qualifier = 'author') AND resource_type_id = 2 group by text_value order by count desc) to /tmp/authors.csv with csv; COPY 54701 "/> - + @@ -944,6 +944,8 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sor
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -952,8 +954,6 @@ $ cat dspace.log.2017-11-28 | grep -o -E 'session_id=[A-Z0-9]{32}' | sor
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2017-12/index.html b/docs/2017-12/index.html index 5f7e8b092..d0b85a370 100644 --- a/docs/2017-12/index.html +++ b/docs/2017-12/index.html @@ -30,7 +30,7 @@ The logs say “Timeout waiting for idle object” PostgreSQL activity says there are 115 connections currently The list of connections to XMLUI and REST API for today: "/> - + @@ -783,6 +783,8 @@ DELETE 20
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -791,8 +793,6 @@ DELETE 20
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2018-01/index.html b/docs/2018-01/index.html index f1320ab5c..648b21c01 100644 --- a/docs/2018-01/index.html +++ b/docs/2018-01/index.html @@ -150,7 +150,7 @@ dspace.log.2018-01-02:34 Danny wrote to ask for help renewing the wildcard ilri.org certificate and I advised that we should probably use Let’s Encrypt if it’s just a handful of domains "/> - + @@ -1452,6 +1452,8 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -1460,8 +1462,6 @@ Catalina:type=Manager,context=/,host=localhost activeSessions 8
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2018-02/index.html b/docs/2018-02/index.html index 8b94c9f36..f355ad797 100644 --- a/docs/2018-02/index.html +++ b/docs/2018-02/index.html @@ -30,7 +30,7 @@ We don’t need to distinguish between internal and external works, so that Yesterday I figured out how to monitor DSpace sessions using JMX I copied the logic in the jmx_tomcat_dbpools provided by Ubuntu’s munin-plugins-java package and used the stuff I discovered about JMX in 2018-01 "/> - + @@ -1038,6 +1038,8 @@ UPDATE 3
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -1046,8 +1048,6 @@ UPDATE 3
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2018-03/index.html b/docs/2018-03/index.html index 3bbda74a4..29d0004e0 100644 --- a/docs/2018-03/index.html +++ b/docs/2018-03/index.html @@ -24,7 +24,7 @@ Export a CSV of the IITA community metadata for Martin Mueller Export a CSV of the IITA community metadata for Martin Mueller "/> - + @@ -585,6 +585,8 @@ Fixed 5 occurences of: GENEBANKS
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -593,8 +595,6 @@ Fixed 5 occurences of: GENEBANKS
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2018-04/index.html b/docs/2018-04/index.html index d8e693c86..9f4f94156 100644 --- a/docs/2018-04/index.html +++ b/docs/2018-04/index.html @@ -26,7 +26,7 @@ Catalina logs at least show some memory errors yesterday: I tried to test something on DSpace Test but noticed that it’s down since god knows when Catalina logs at least show some memory errors yesterday: "/> - + @@ -594,6 +594,8 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -602,8 +604,6 @@ $ pg_restore -O -U dspacetest -d dspacetest -W -h localhost /tmp/dspace_2018-04-
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2018-05/index.html b/docs/2018-05/index.html index ab25dbe44..6e7066f10 100644 --- a/docs/2018-05/index.html +++ b/docs/2018-05/index.html @@ -38,7 +38,7 @@ http://localhost:3000/solr/statistics/update?stream.body=%3Ccommit/%3E Then I reduced the JVM heap size from 6144 back to 5120m Also, I switched it to use OpenJDK instead of Oracle Java, as well as re-worked the Ansible infrastructure scripts to support hosts choosing which distribution they want to use "/> - + @@ -523,6 +523,8 @@ $ psql -h localhost -U postgres dspacetest
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -531,8 +533,6 @@ $ psql -h localhost -U postgres dspacetest
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2018-06/index.html b/docs/2018-06/index.html index 8282676dc..a5345a98c 100644 --- a/docs/2018-06/index.html +++ b/docs/2018-06/index.html @@ -58,7 +58,7 @@ real 74m42.646s user 8m5.056s sys 2m7.289s "/> - + @@ -517,6 +517,8 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -525,8 +527,6 @@ $ sed '/^id/d' 10568-*.csv | csvcut -c 1,2 > map-to-cifor-archive.csv
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2018-07/index.html b/docs/2018-07/index.html index cd885d171..244009945 100644 --- a/docs/2018-07/index.html +++ b/docs/2018-07/index.html @@ -36,7 +36,7 @@ During the mvn package stage on the 5.8 branch I kept getting issues with java r There is insufficient memory for the Java Runtime Environment to continue. "/> - + @@ -569,6 +569,8 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -577,8 +579,6 @@ dspace=# select count(text_value) from metadatavalue where resource_type_id=2 an
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2018-08/index.html b/docs/2018-08/index.html index 3779ee96f..527191849 100644 --- a/docs/2018-08/index.html +++ b/docs/2018-08/index.html @@ -46,7 +46,7 @@ Anyways, perhaps I should increase the JVM heap from 5120m to 6144m like we did The server only has 8GB of RAM so we’ll eventually need to upgrade to a larger one because we’ll start starving the OS, PostgreSQL, and command line batch processes I ran all system updates on DSpace Test and rebooted it "/> - + @@ -442,6 +442,8 @@ $ dspace database migrate ignored
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -450,8 +452,6 @@ $ dspace database migrate ignored
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2018-09/index.html b/docs/2018-09/index.html index 2b99cc232..b136b7f88 100644 --- a/docs/2018-09/index.html +++ b/docs/2018-09/index.html @@ -30,7 +30,7 @@ I’ll update the DSpace role in our Ansible infrastructure playbooks and ru Also, I’ll re-run the postgresql tasks because the custom PostgreSQL variables are dynamic according to the system’s RAM, and we never re-ran them after migrating to larger Linodes last month I’m testing the new DSpace 5.8 branch in my Ubuntu 18.04 environment and I’m getting those autowire errors in Tomcat 8.5.30 again: "/> - + @@ -748,6 +748,8 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND me
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -756,8 +758,6 @@ UPDATE metadatavalue SET text_value='ja' WHERE resource_type_id=2 AND me
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2018-10/index.html b/docs/2018-10/index.html index 1553f7de5..61ab664ec 100644 --- a/docs/2018-10/index.html +++ b/docs/2018-10/index.html @@ -26,7 +26,7 @@ I created a GitHub issue to track this #389, because I’m super busy in Nai Phil Thornton got an ORCID identifier so we need to add it to the list on CGSpace and tag his existing items I created a GitHub issue to track this #389, because I’m super busy in Nairobi right now "/> - + @@ -656,6 +656,8 @@ $ curl -X GET -H "Content-Type: application/json" -H "Accept: applic
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -664,8 +666,6 @@ $ curl -X GET -H "Content-Type: application/json" -H "Accept: applic
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2018-11/index.html b/docs/2018-11/index.html index c87f473af..dbfd25021 100644 --- a/docs/2018-11/index.html +++ b/docs/2018-11/index.html @@ -36,7 +36,7 @@ Send a note about my dspace-statistics-api to the dspace-tech mailing list Linode has been sending mails a few times a day recently that CGSpace (linode18) has had high CPU usage Today these are the top 10 IPs: "/> - + @@ -553,6 +553,8 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -561,8 +563,6 @@ $ dspace dsrun org.dspace.eperson.Groomer -a -b 11/27/2016 -d
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2018-12/index.html b/docs/2018-12/index.html index 1de8344ce..860a1a16a 100644 --- a/docs/2018-12/index.html +++ b/docs/2018-12/index.html @@ -36,7 +36,7 @@ Then I ran all system updates and restarted the server I noticed that there is another issue with PDF thumbnails on CGSpace, and I see there was another Ghostscript vulnerability last week "/> - + @@ -594,6 +594,8 @@ UPDATE 1
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -602,8 +604,6 @@ UPDATE 1
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2019-01/index.html b/docs/2019-01/index.html index 01fb191ac..142d2bacd 100644 --- a/docs/2019-01/index.html +++ b/docs/2019-01/index.html @@ -50,7 +50,7 @@ I don’t see anything interesting in the web server logs around that time t 357 207.46.13.1 903 54.70.40.11 "/> - + @@ -1264,6 +1264,8 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInter
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -1272,8 +1274,6 @@ identify: CorruptImageProfile `xmp' @ warning/profile.c/SetImageProfileInter
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2019-02/index.html b/docs/2019-02/index.html index 6fc01c9b3..62dbff0e7 100644 --- a/docs/2019-02/index.html +++ b/docs/2019-02/index.html @@ -72,7 +72,7 @@ real 0m19.873s user 0m22.203s sys 0m1.979s "/> - + @@ -1344,6 +1344,8 @@ Please see the DSpace documentation for assistance.
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -1352,8 +1354,6 @@ Please see the DSpace documentation for assistance.
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2019-03/index.html b/docs/2019-03/index.html index 362b4ad24..677ae8382 100644 --- a/docs/2019-03/index.html +++ b/docs/2019-03/index.html @@ -46,7 +46,7 @@ Most worryingly, there are encoding errors in the abstracts for eleven items, fo I think I will need to ask Udana to re-copy and paste the abstracts with more care using Google Docs "/> - + @@ -1208,6 +1208,8 @@ sys 0m2.551s
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -1216,8 +1218,6 @@ sys 0m2.551s
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2019-04/index.html b/docs/2019-04/index.html index 10ec479b7..167e5e12d 100644 --- a/docs/2019-04/index.html +++ b/docs/2019-04/index.html @@ -64,7 +64,7 @@ $ ./fix-metadata-values.py -i /tmp/2019-02-21-fix-4-regions.csv -db dspace -u ds $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-2-countries.csv -db dspace -u dspace -p 'fuuu' -m 228 -f cg.coverage.country -d $ ./delete-metadata-values.py -i /tmp/2019-02-21-delete-1-region.csv -db dspace -u dspace -p 'fuuu' -m 231 -f cg.coverage.region -d "/> - + @@ -1299,6 +1299,8 @@ UPDATE 14
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -1307,8 +1309,6 @@ UPDATE 14
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2019-05/index.html b/docs/2019-05/index.html index d87aa1546..bf8cc01b6 100644 --- a/docs/2019-05/index.html +++ b/docs/2019-05/index.html @@ -48,7 +48,7 @@ DELETE 1 But after this I tried to delete the item from the XMLUI and it is still present… "/> - + @@ -631,6 +631,8 @@ COPY 64871
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -639,8 +641,6 @@ COPY 64871
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2019-06/index.html b/docs/2019-06/index.html index 96f4b5e7f..b29b14863 100644 --- a/docs/2019-06/index.html +++ b/docs/2019-06/index.html @@ -34,7 +34,7 @@ Run system updates on CGSpace (linode18) and reboot it Skype with Marie-Angélique and Abenet about CG Core v2 "/> - + @@ -317,6 +317,8 @@ UPDATE 2
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -325,8 +327,6 @@ UPDATE 2
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2019-07/index.html b/docs/2019-07/index.html index 03f0f409a..c9e728af4 100644 --- a/docs/2019-07/index.html +++ b/docs/2019-07/index.html @@ -38,7 +38,7 @@ CGSpace Abenet had another similar issue a few days ago when trying to find the stats for 2018 in the RTB community "/> - + @@ -554,6 +554,8 @@ issn.validate('1020-3362')
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -562,8 +564,6 @@ issn.validate('1020-3362')
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2019-08/index.html b/docs/2019-08/index.html index 3e16d9c25..dbae3a42c 100644 --- a/docs/2019-08/index.html +++ b/docs/2019-08/index.html @@ -46,7 +46,7 @@ After rebooting, all statistics cores were loaded… wow, that’s luck Run system updates on DSpace Test (linode19) and reboot it "/> - + @@ -573,6 +573,8 @@ sys 2m27.496s
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -581,8 +583,6 @@ sys 2m27.496s
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2019-09/index.html b/docs/2019-09/index.html index 893baf4bd..2fddecf9f 100644 --- a/docs/2019-09/index.html +++ b/docs/2019-09/index.html @@ -72,7 +72,7 @@ Here are the top ten IPs in the nginx XMLUI and REST/OAI logs this morning: 7249 2a01:7e00::f03c:91ff:fe18:7396 9124 45.5.186.2 "/> - + @@ -581,6 +581,8 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -589,8 +591,6 @@ $ csv-metadata-quality -i /tmp/clarisa-institutions.csv -o /tmp/clarisa-institut
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2019-10/index.html b/docs/2019-10/index.html index f849aa3bb..9bc8eb759 100644 --- a/docs/2019-10/index.html +++ b/docs/2019-10/index.html @@ -18,7 +18,7 @@ - + @@ -385,6 +385,8 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -393,8 +395,6 @@ $ dspace import -a -c 10568/104057 -e fuu@cgiar.org -m 2019-10-15-Bioversity.map
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2019-11/index.html b/docs/2019-11/index.html index 1c449003a..4e0f4aeb4 100644 --- a/docs/2019-11/index.html +++ b/docs/2019-11/index.html @@ -58,7 +58,7 @@ Let’s see how many of the REST API requests were for bitstreams (because t # zcat --force /var/log/nginx/rest.log.*.gz | grep -E "[0-9]{1,2}/Oct/2019" | grep -c -E "/rest/bitstreams" 106781 "/> - + @@ -692,6 +692,8 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -700,8 +702,6 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2019-12/index.html b/docs/2019-12/index.html index 7d346077d..b35079d77 100644 --- a/docs/2019-12/index.html +++ b/docs/2019-12/index.html @@ -46,7 +46,7 @@ Make sure all packages are up to date and the package manager is up to date, the # dpkg -C # reboot "/> - + @@ -404,6 +404,8 @@ UPDATE 1
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -412,8 +414,6 @@ UPDATE 1
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2020-01/index.html b/docs/2020-01/index.html index b27f2aedd..2f1c84b6f 100644 --- a/docs/2020-01/index.html +++ b/docs/2020-01/index.html @@ -56,7 +56,7 @@ I tweeted the CGSpace repository link "/> - + @@ -604,6 +604,8 @@ COPY 2900
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -612,8 +614,6 @@ COPY 2900
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2020-02/index.html b/docs/2020-02/index.html index 0f77501bf..f971f5aac 100644 --- a/docs/2020-02/index.html +++ b/docs/2020-02/index.html @@ -38,7 +38,7 @@ The code finally builds and runs with a fresh install "/> - + @@ -1275,6 +1275,8 @@ Moving: 21993 into core statistics-2019
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -1283,8 +1285,6 @@ Moving: 21993 into core statistics-2019
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2020-03/index.html b/docs/2020-03/index.html index 86922e220..32abd3ccb 100644 --- a/docs/2020-03/index.html +++ b/docs/2020-03/index.html @@ -42,7 +42,7 @@ You need to download this into the DSpace 6.x source and compile it "/> - + @@ -484,6 +484,8 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -492,8 +494,6 @@ $ tidy -xml -utf8 -iq -m -w 0 dspace/config/controlled-vocabularies/cg-creator-i
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2020-04/index.html b/docs/2020-04/index.html index edaa33efc..aaa427eb4 100644 --- a/docs/2020-04/index.html +++ b/docs/2020-04/index.html @@ -48,7 +48,7 @@ The third item now has a donut with score 1 since I tweeted it last week On the same note, the one item Abenet pointed out last week now has a donut with score of 104 after I tweeted it last week "/> - + @@ -658,6 +658,8 @@ $ psql -c 'select * from pg_stat_activity' | wc -l
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -666,8 +668,6 @@ $ psql -c 'select * from pg_stat_activity' | wc -l
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2020-05/index.html b/docs/2020-05/index.html index 8a28ec46b..89518b79d 100644 --- a/docs/2020-05/index.html +++ b/docs/2020-05/index.html @@ -34,7 +34,7 @@ I see that CGSpace (linode18) is still using PostgreSQL JDBC driver version 42.2 "/> - + @@ -477,6 +477,8 @@ Caused by: java.lang.NullPointerException
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -485,8 +487,6 @@ Caused by: java.lang.NullPointerException
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2020-06/index.html b/docs/2020-06/index.html index 12648d283..31d6f40e5 100644 --- a/docs/2020-06/index.html +++ b/docs/2020-06/index.html @@ -36,7 +36,7 @@ I sent Atmire the dspace.log from today and told them to log into the server to In other news, I checked the statistics API on DSpace 6 and it’s working I tried to build the OAI registry on the freshly migrated DSpace 6 on DSpace Test and I get an error: "/> - + @@ -811,6 +811,8 @@ $ csvcut -c 'id,cg.subject.ilri[],cg.subject.ilri[en_US],dc.subject[en_US]&#
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -819,8 +821,6 @@ $ csvcut -c 'id,cg.subject.ilri[],cg.subject.ilri[en_US],dc.subject[en_US]&#
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2020-07/index.html b/docs/2020-07/index.html index 440dc8e51..d2f11e507 100644 --- a/docs/2020-07/index.html +++ b/docs/2020-07/index.html @@ -38,7 +38,7 @@ I restarted Tomcat and PostgreSQL and the issue was gone Since I was restarting Tomcat anyways I decided to redeploy the latest changes from the 5_x-prod branch and I added a note about COVID-19 items to the CGSpace frontpage at Peter’s request "/> - + @@ -1142,6 +1142,8 @@ Fixed 4 occurences of: Muloi, D.M.
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -1150,8 +1152,6 @@ Fixed 4 occurences of: Muloi, D.M.
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2020-08/index.html b/docs/2020-08/index.html index a34a7689c..20e5c5310 100644 --- a/docs/2020-08/index.html +++ b/docs/2020-08/index.html @@ -36,7 +36,7 @@ It is class based so I can easily add support for other vocabularies, and the te "/> - + @@ -798,6 +798,8 @@ $ grep -c added /tmp/2020-08-27-countrycodetagger.log
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -806,8 +808,6 @@ $ grep -c added /tmp/2020-08-27-countrycodetagger.log
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2020-09/index.html b/docs/2020-09/index.html index b8f85cc4c..b94c1deed 100644 --- a/docs/2020-09/index.html +++ b/docs/2020-09/index.html @@ -48,7 +48,7 @@ I filed a bug on OpenRXV: https://github.com/ilri/OpenRXV/issues/39 I filed an issue on OpenRXV to make some minor edits to the admin UI: https://github.com/ilri/OpenRXV/issues/40 "/> - + @@ -717,6 +717,8 @@ solr_query_params = {
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -725,8 +727,6 @@ solr_query_params = {
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2020-10/index.html b/docs/2020-10/index.html index 4a58b9aa0..a9e16451e 100644 --- a/docs/2020-10/index.html +++ b/docs/2020-10/index.html @@ -44,7 +44,7 @@ During the FlywayDB migration I got an error: "/> - + @@ -1241,6 +1241,8 @@ $ ./delete-metadata-values.py -i 2020-10-31-delete-74-sponsors.csv -db dspace -u
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -1249,8 +1251,6 @@ $ ./delete-metadata-values.py -i 2020-10-31-delete-74-sponsors.csv -db dspace -u
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2020-11/index.html b/docs/2020-11/index.html index 967d2b515..9f224e28d 100644 --- a/docs/2020-11/index.html +++ b/docs/2020-11/index.html @@ -32,7 +32,7 @@ So far we’ve spent at least fifty hours to process the statistics and stat "/> - + @@ -731,6 +731,8 @@ $ ./fix-metadata-values.py -i 2020-11-30-fix-hung-orcid.csv -db dspace63 -u dspa
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -739,8 +741,6 @@ $ ./fix-metadata-values.py -i 2020-11-30-fix-hung-orcid.csv -db dspace63 -u dspa
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2020-12/index.html b/docs/2020-12/index.html index 5f9a13467..5ab046432 100644 --- a/docs/2020-12/index.html +++ b/docs/2020-12/index.html @@ -36,7 +36,7 @@ I started processing those (about 411,000 records): "/> - + @@ -869,6 +869,8 @@ $ query-json '.items | length' /tmp/policy2.json
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -877,8 +879,6 @@ $ query-json '.items | length' /tmp/policy2.json
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2021-01/index.html b/docs/2021-01/index.html index 527854be2..f94f2e5b4 100644 --- a/docs/2021-01/index.html +++ b/docs/2021-01/index.html @@ -50,7 +50,7 @@ For example, this item has 51 views on CGSpace, but 0 on AReS "/> - + @@ -688,6 +688,8 @@ java.lang.IllegalArgumentException: Invalid character found in the request targe
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -696,8 +698,6 @@ java.lang.IllegalArgumentException: Invalid character found in the request targe
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2021-02/index.html b/docs/2021-02/index.html index 86c519653..b9501f447 100644 --- a/docs/2021-02/index.html +++ b/docs/2021-02/index.html @@ -60,7 +60,7 @@ $ curl -s 'http://localhost:9200/openrxv-items-temp/_count?q=*&pretty } } "/> - + @@ -898,6 +898,8 @@ dspace=# UPDATE metadatavalue SET text_lang='en_US' WHERE dspace_object_
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -906,8 +908,6 @@ dspace=# UPDATE metadatavalue SET text_lang='en_US' WHERE dspace_object_
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2021-03/index.html b/docs/2021-03/index.html index fe1fa72d2..480ccc235 100644 --- a/docs/2021-03/index.html +++ b/docs/2021-03/index.html @@ -34,7 +34,7 @@ Also, we found some issues building and running OpenRXV currently due to ecosyst "/> - + @@ -875,6 +875,8 @@ Also, we found some issues building and running OpenRXV currently due to ecosyst
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -883,8 +885,6 @@ Also, we found some issues building and running OpenRXV currently due to ecosyst
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2021-04/index.html b/docs/2021-04/index.html index 3c8514cab..f979298ad 100644 --- a/docs/2021-04/index.html +++ b/docs/2021-04/index.html @@ -44,7 +44,7 @@ Perhaps one of the containers crashed, I should have looked closer but I was in "/> - + @@ -1042,6 +1042,8 @@ $ chrt -b 0 dspace dsrun com.atmire.statistics.util.update.atomic.AtomicStatisti
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -1050,8 +1052,6 @@ $ chrt -b 0 dspace dsrun com.atmire.statistics.util.update.atomic.AtomicStatisti
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2021-05/index.html b/docs/2021-05/index.html index 29b4b9283..bb0076785 100644 --- a/docs/2021-05/index.html +++ b/docs/2021-05/index.html @@ -36,7 +36,7 @@ I looked at the top user agents and IPs in the Solr statistics for last month an I will add the RI/1.0 pattern to our DSpace agents overload and purge them from Solr (we had previously seen this agent with 9,000 hits or so in 2020-09), but I think I will leave the Microsoft Word one… as that’s an actual user… "/> - + @@ -685,6 +685,8 @@ May 26, 02:57 UTC
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -693,8 +695,6 @@ May 26, 02:57 UTC
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2021-06/index.html b/docs/2021-06/index.html index 277343767..fb305750d 100644 --- a/docs/2021-06/index.html +++ b/docs/2021-06/index.html @@ -36,7 +36,7 @@ I simply started it and AReS was running again: "/> - + @@ -693,6 +693,8 @@ I simply started it and AReS was running again:
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -701,8 +703,6 @@ I simply started it and AReS was running again:
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2021-07/index.html b/docs/2021-07/index.html index f710fb98b..89408fc0e 100644 --- a/docs/2021-07/index.html +++ b/docs/2021-07/index.html @@ -30,7 +30,7 @@ Export another list of ALL subjects on CGSpace, including AGROVOC and non-AGROVO localhost/dspace63= > \COPY (SELECT DISTINCT LOWER(text_value) AS subject, count(*) FROM metadatavalue WHERE dspace_object_id in (SELECT dspace_object_id FROM item) AND metadata_field_id IN (119, 120, 127, 122, 128, 125, 135, 203, 208, 210, 215, 123, 236, 242, 187) GROUP BY subject ORDER BY count DESC) to /tmp/2021-07-01-all-subjects.csv WITH CSV HEADER; COPY 20994 "/> - + @@ -715,6 +715,8 @@ COPY 20994
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -723,8 +725,6 @@ COPY 20994
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2021-08/index.html b/docs/2021-08/index.html index 43aac9b8a..4ccd2dc97 100644 --- a/docs/2021-08/index.html +++ b/docs/2021-08/index.html @@ -32,7 +32,7 @@ Update Docker images on AReS server (linode20) and reboot the server: I decided to upgrade linode20 from Ubuntu 18.04 to 20.04 "/> - + @@ -606,6 +606,8 @@ I decided to upgrade linode20 from Ubuntu 18.04 to 20.04
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -614,8 +616,6 @@ I decided to upgrade linode20 from Ubuntu 18.04 to 20.04
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2021-09/index.html b/docs/2021-09/index.html index 7bf1aea14..4f4eecc64 100644 --- a/docs/2021-09/index.html +++ b/docs/2021-09/index.html @@ -48,7 +48,7 @@ The syntax Moayad showed me last month doesn’t seem to honor the search qu "/> - + @@ -588,6 +588,8 @@ The syntax Moayad showed me last month doesn’t seem to honor the search qu
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -596,8 +598,6 @@ The syntax Moayad showed me last month doesn’t seem to honor the search qu
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2021-10/index.html b/docs/2021-10/index.html index 747db419a..12d0c249b 100644 --- a/docs/2021-10/index.html +++ b/docs/2021-10/index.html @@ -46,7 +46,7 @@ $ wc -l /tmp/2021-10-01-affiliations.txt So we have 1879/7100 (26.46%) matching already "/> - + @@ -791,6 +791,8 @@ Try doing it in two imports. In first import, remove all authors. In second impo
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -799,8 +801,6 @@ Try doing it in two imports. In first import, remove all authors. In second impo
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2021-11/index.html b/docs/2021-11/index.html index 905ab94b9..96d20c458 100644 --- a/docs/2021-11/index.html +++ b/docs/2021-11/index.html @@ -32,7 +32,7 @@ First I exported all the 2019 stats from CGSpace: $ ./run.sh -s http://localhost:8081/solr/statistics -f 'time:2019-*' -a export -o statistics-2019.json -k uid $ zstd statistics-2019.json "/> - + @@ -494,6 +494,8 @@ $ zstd statistics-2019.json
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -502,8 +504,6 @@ $ zstd statistics-2019.json
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2021-12/index.html b/docs/2021-12/index.html index fa9075cec..d5291c3a5 100644 --- a/docs/2021-12/index.html +++ b/docs/2021-12/index.html @@ -40,7 +40,7 @@ Purging 455 hits from WhatsApp in statistics Total number of bot hits purged: 3679 "/> - + @@ -577,6 +577,8 @@ Total number of bot hits purged: 3679
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -585,8 +587,6 @@ Total number of bot hits purged: 3679
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2022-01/index.html b/docs/2022-01/index.html index 45654b3ca..93df8a114 100644 --- a/docs/2022-01/index.html +++ b/docs/2022-01/index.html @@ -24,7 +24,7 @@ Start a full harvest on AReS Start a full harvest on AReS "/> - + @@ -380,6 +380,8 @@ Start a full harvest on AReS
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -388,8 +390,6 @@ Start a full harvest on AReS
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2022-02/index.html b/docs/2022-02/index.html index ffea0fdc7..424777ee5 100644 --- a/docs/2022-02/index.html +++ b/docs/2022-02/index.html @@ -38,7 +38,7 @@ We agreed to try to do more alignment of affiliations/funders with ROR "/> - + @@ -724,6 +724,8 @@ isNotNull(value.match('699'))
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -732,8 +734,6 @@ isNotNull(value.match('699'))
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2022-03/index.html b/docs/2022-03/index.html index b64a18511..0ad7c6064 100644 --- a/docs/2022-03/index.html +++ b/docs/2022-03/index.html @@ -34,7 +34,7 @@ $ ./ilri/check-duplicates.py -i /tmp/tac4.csv -db dspace -u dspace -p 'fuuu& $ csvcut -c id,filename ~/Downloads/2022-03-01-CGSpace-TAC-ICW-batch4-701-980.csv > /tmp/tac4-filenames.csv $ csvjoin -c id /tmp/2022-03-01-tac-batch4-701-980.csv /tmp/tac4-filenames.csv > /tmp/2022-03-01-tac-batch4-701-980-filenames.csv "/> - + @@ -476,6 +476,8 @@ isNotNull(value.match('889'))
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -484,8 +486,6 @@ isNotNull(value.match('889'))
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2022-04/index.html b/docs/2022-04/index.html index f40157f76..b844efcd3 100644 --- a/docs/2022-04/index.html +++ b/docs/2022-04/index.html @@ -18,7 +18,7 @@ - + @@ -509,6 +509,8 @@
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -517,8 +519,6 @@
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2022-05/index.html b/docs/2022-05/index.html index 6ad4301d9..f80a80fb9 100644 --- a/docs/2022-05/index.html +++ b/docs/2022-05/index.html @@ -66,7 +66,7 @@ If I query Solr for time:2022-04* AND dns:*msnbot* AND dns:*.msn.com. I see a ha I purged 93,974 hits from these IPs using my check-spider-ip-hits.sh script "/> - + @@ -445,6 +445,8 @@ I purged 93,974 hits from these IPs using my check-spider-ip-hits.sh script
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -453,8 +455,6 @@ I purged 93,974 hits from these IPs using my check-spider-ip-hits.sh script
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2022-06/index.html b/docs/2022-06/index.html index bf720721c..c65936089 100644 --- a/docs/2022-06/index.html +++ b/docs/2022-06/index.html @@ -48,7 +48,7 @@ There seem to be many more of these: "/> - + @@ -458,6 +458,8 @@ There seem to be many more of these:
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -466,8 +468,6 @@ There seem to be many more of these:
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2022-07/index.html b/docs/2022-07/index.html index a0922a488..c23f71aa4 100644 --- a/docs/2022-07/index.html +++ b/docs/2022-07/index.html @@ -34,7 +34,7 @@ Also, the trgm functions I’ve used before are case insensitive, but Levens "/> - + @@ -736,6 +736,8 @@ Also, the trgm functions I’ve used before are case insensitive, but Levens
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -744,8 +746,6 @@ Also, the trgm functions I’ve used before are case insensitive, but Levens
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2022-08/index.html b/docs/2022-08/index.html index 6143eb2bd..cf218f784 100644 --- a/docs/2022-08/index.html +++ b/docs/2022-08/index.html @@ -24,7 +24,7 @@ Our request to add CC-BY-3.0-IGO to SPDX was approved a few weeks ago Our request to add CC-BY-3.0-IGO to SPDX was approved a few weeks ago "/> - + @@ -522,6 +522,8 @@ Our request to add CC-BY-3.0-IGO to SPDX was approved a few weeks ago
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -530,8 +532,6 @@ Our request to add CC-BY-3.0-IGO to SPDX was approved a few weeks ago
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2022-09/index.html b/docs/2022-09/index.html index 098983abb..d9dcca53c 100644 --- a/docs/2022-09/index.html +++ b/docs/2022-09/index.html @@ -46,7 +46,7 @@ I also fixed a few bugs and improved the region-matching logic "/> - + @@ -783,6 +783,8 @@ harvesting of meat from wildlife and not from livestock.

    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -791,8 +793,6 @@ harvesting of meat from wildlife and not from livestock.

  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2022-10/index.html b/docs/2022-10/index.html index 0ae9b6788..7caf1fc7d 100644 --- a/docs/2022-10/index.html +++ b/docs/2022-10/index.html @@ -36,7 +36,7 @@ I filed an issue to ask about Java 11+ support "/> - + @@ -978,6 +978,8 @@ I filed an issue to ask about Java 11+ support
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -986,8 +988,6 @@ I filed an issue to ask about Java 11+ support
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2022-11/index.html b/docs/2022-11/index.html index d2d5bd915..9117c123c 100644 --- a/docs/2022-11/index.html +++ b/docs/2022-11/index.html @@ -44,7 +44,7 @@ I want to make sure they use groups instead of individuals where possible! I reverted the Cocoon autosave change because it was more of a nuissance that Peter can’t upload CSVs from the web interface and is a very low severity security issue "/> - + @@ -757,6 +757,8 @@ I reverted the Cocoon autosave change because it was more of a nuissance that Pe
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -765,8 +767,6 @@ I reverted the Cocoon autosave change because it was more of a nuissance that Pe
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2022-12/index.html b/docs/2022-12/index.html index 16ea6203c..1a1517e8d 100644 --- a/docs/2022-12/index.html +++ b/docs/2022-12/index.html @@ -36,7 +36,7 @@ I exported the CCAFS and IITA communities, extracted just the country and region Add a few more authors to my CSV with author names and ORCID identifiers and tag 283 items! Replace “East Asia” with “Eastern Asia” region on CGSpace (UN M.49 region) "/> - + @@ -577,6 +577,8 @@ Replace “East Asia” with “Eastern Asia” region on CGSpac
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -585,8 +587,6 @@ Replace “East Asia” with “Eastern Asia” region on CGSpac
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2023-01/index.html b/docs/2023-01/index.html index 0e8f4f68a..6aeaabac9 100644 --- a/docs/2023-01/index.html +++ b/docs/2023-01/index.html @@ -34,7 +34,7 @@ I see we have some new ones that aren’t in our list if I combine with this "/> - + @@ -827,6 +827,8 @@ I see we have some new ones that aren’t in our list if I combine with this
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -835,8 +837,6 @@ I see we have some new ones that aren’t in our list if I combine with this
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2023-02/index.html b/docs/2023-02/index.html index 5fbaf64dc..f2368af4d 100644 --- a/docs/2023-02/index.html +++ b/docs/2023-02/index.html @@ -32,7 +32,7 @@ I want to try to expand my use of their data to journals, publishers, volumes, i "/> - + @@ -647,6 +647,8 @@ I want to try to expand my use of their data to journals, publishers, volumes, i
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -655,8 +657,6 @@ I want to try to expand my use of their data to journals, publishers, volumes, i
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2023-03/index.html b/docs/2023-03/index.html index 90a3ca2df..696fa8ba4 100644 --- a/docs/2023-03/index.html +++ b/docs/2023-03/index.html @@ -28,7 +28,7 @@ Remove cg.subject.wle and cg.identifier.wletheme from CGSpace input form after c iso-codes 4.13.0 was released, which incorporates my changes to the common names for Iran, Laos, and Syria I finally got through with porting the input form from DSpace 6 to DSpace 7 "/> - + @@ -859,6 +859,8 @@ RL: performed 0 reads and 16 write i/o operations
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -867,8 +869,6 @@ RL: performed 0 reads and 16 write i/o operations
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2023-04/index.html b/docs/2023-04/index.html index ce3cc55e3..ccaa248a9 100644 --- a/docs/2023-04/index.html +++ b/docs/2023-04/index.html @@ -36,7 +36,7 @@ I also did a check for missing country/region mappings with csv-metadata-quality Start a harvest on AReS "/> - + @@ -751,6 +751,8 @@ Start a harvest on AReS
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -759,8 +761,6 @@ Start a harvest on AReS
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2023-05/index.html b/docs/2023-05/index.html index 3dcc9d26a..a4c81c4f5 100644 --- a/docs/2023-05/index.html +++ b/docs/2023-05/index.html @@ -46,7 +46,7 @@ Also I found at least two spelling mistakes, for example “decison support Work on cleaning, proofing, and uploading twenty-seven records for IFPRI to CGSpace "/> - + @@ -374,6 +374,8 @@ Work on cleaning, proofing, and uploading twenty-seven records for IFPRI to CGSp
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -382,8 +384,6 @@ Work on cleaning, proofing, and uploading twenty-seven records for IFPRI to CGSp
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2023-06/index.html b/docs/2023-06/index.html index 9b49c9d9c..f84dbead5 100644 --- a/docs/2023-06/index.html +++ b/docs/2023-06/index.html @@ -44,7 +44,7 @@ From what I can see we need to upgrade the MODS schema from 3.1 to 3.7 and then "/> - + @@ -446,6 +446,8 @@ From what I can see we need to upgrade the MODS schema from 3.1 to 3.7 and then
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -454,8 +456,6 @@ From what I can see we need to upgrade the MODS schema from 3.1 to 3.7 and then
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2023-07/index.html b/docs/2023-07/index.html index ebb84a0a9..2596313b6 100644 --- a/docs/2023-07/index.html +++ b/docs/2023-07/index.html @@ -18,7 +18,7 @@ - + @@ -479,6 +479,8 @@
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -487,8 +489,6 @@
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2023-08/index.html b/docs/2023-08/index.html index 17636ad01..1d22ea6f2 100644 --- a/docs/2023-08/index.html +++ b/docs/2023-08/index.html @@ -34,7 +34,7 @@ I did some minor cleanups myself and applied them to CGSpace Start working on some batch uploads for IFPRI "/> - + @@ -460,6 +460,8 @@ UPDATE 1
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -468,8 +470,6 @@ UPDATE 1
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2023-09/index.html b/docs/2023-09/index.html index ba0942591..7fea4c752 100644 --- a/docs/2023-09/index.html +++ b/docs/2023-09/index.html @@ -26,7 +26,7 @@ Start a harvest on AReS Export CGSpace to check for missing Initiative collection mappings Start a harvest on AReS "/> - + @@ -407,6 +407,8 @@ Start a harvest on AReS
    +
  1. November, 2023
    2. +
  2. October, 2023
  3. September, 2023
    4. @@ -415,8 +417,6 @@ Start a harvest on AReS
  4. July, 2023
    5. -
  5. June, 2023
    6. -
diff --git a/docs/2023-10/index.html b/docs/2023-10/index.html index 8d4d26fc0..b121695d7 100644 --- a/docs/2023-10/index.html +++ b/docs/2023-10/index.html @@ -20,7 +20,7 @@ We can be on the safe side by using only abstracts for items that are licensed u - + @@ -36,7 +36,7 @@ We can be on the safe side by using only abstracts for items that are licensed u "/> - + @@ -46,9 +46,9 @@ We can be on the safe side by using only abstracts for items that are licensed u "@type": "BlogPosting", "headline": "October, 2023", "url": "https://alanorth.github.io/cgspace-notes/2023-10/", - "wordCount": "1089", + "wordCount": "1153", "datePublished": "2023-10-02T09:05:36+03:00", - "dateModified": "2023-10-24T23:26:01+03:00", + "dateModified": "2023-11-02T20:58:43+03:00", "author": { "@type": "Person", "name": "Alan Orth" @@ -307,6 +307,23 @@ We can be on the safe side by using only abstracts for items that are licensed u
  • Test some LDAP patches for DSpace 7
    • +

    2023-10-30

    + +

    2023-10-31

    + @@ -328,6 +345,8 @@ We can be on the safe side by using only abstracts for items that are licensed u
      +
    1. November, 2023
      2. +
    2. October, 2023
    3. September, 2023
      4. @@ -336,8 +355,6 @@ We can be on the safe side by using only abstracts for items that are licensed u
    4. July, 2023
      5. -
    5. June, 2023
      6. -
    diff --git a/docs/2023-11/index.html b/docs/2023-11/index.html new file mode 100644 index 000000000..221cae82d --- /dev/null +++ b/docs/2023-11/index.html @@ -0,0 +1,298 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + November, 2023 | CGSpace Notes + + + + + + + + + + + + + + + + + + + + + +
    +
    + +
    +
    + + + + +
    +
    +

    CGSpace Notes

    +

    Documenting day-to-day work on the CGSpace repository.

    +
    +
    + + + + +
    +
    +
    + + + + +
    +
    +

    November, 2023

    +

    + + in + Notes + + +

    +
    +

    2023-11-01

    +
      +
    • Work a bit on the ETL pipeline for the CGIAR Climate Change Synthesis +
        +
      • I improved the filtering and wrote some Python using pandas to merge my sources more reliably
        • +
      +
      • +
    +

    2023-11-02

    +
      +
    • Export CGSpace to check missing Initiative collection mappings
      • +
    • Start a harvest on AReS
      • +
    +
      +
    • IFPRI contacted us about importing their Slideshare presentations to CGSpace +
        +
      • There are ~1,700 of them and date back to as early as 2008
        • +
      • I did a quick cleanup of the metadata export from Slideshare (including tagging with some AGROVOC in OpenRefine) and uploaded to DSpace Test
        • +
      +
      • +
    +

    2023-11-03

    +
      +
    • A little bit of work on the CGIAR Climate Change Synthesis
      • +
    • Discuss some CGSpace migration plans with Leigh from IFPRI +
        +
      • For their Slideshare content we agreed: +
          +
        • Exclude private
          • +
        • Exclude deleted
          • +
        • Exclude non presentation types
          • +
        • Exclude duplicates within the collection for now until we can sort them out
          • +
        +
        • +
      • That leaves about 1,500 items out of the 1,700
        • +
      +
      • +
    • I did a duplicate check against CGSpace and found 44 items with 1.0 similarity so I removed those
      • +
    +

    2023-11-04

    +
      +
    • Export CGSpace to check for missing Initiative collection mappings
      • +
    • I ran through the list of potential duplicates on the IFPRI Slideshare presentations
      • +
    +

    2023-11-05

    +
      +
    • Work with Salem to migrate AReS to the new version
      • +
    +

    2023-11-07

    +
      +
    • DSpace 7 Test went down and there is very high load on the server +
        +
      • I saw very high load from Java but didn’t have time to check exactly what was wrong so I just rebooted the host
        • +
      • A few hours after restarting the system went down again, with very high load from Java again
        • +
      • I see lots of messages like this in the Tomcat log:
        • +
      +
      • +
    +
    tomcat9[732]: [9955.662s][info   ][gc] GC(6291) Pause Full (G1 Compaction Pause) 4085M->4080M(4096M) 677.251ms
+tomcat9[732]: [9955.662s][info   ][gc] GC(6290) Concurrent Mark Cycle 677.558ms
+tomcat9[732]: [9955.666s][info   ][gc] GC(6292) To-space exhausted
+
      +
    • I see some messages in dspace.log about heap space:
      • +
    +
    Caused by: java.lang.OutOfMemoryError: Java heap space
+
      +
    • I will increase Tomcat’s heap from 4096m to 5120m +
        +
      • A few hours later it happened again, so I increased the heap from 5120m to 6144m
        • +
      • Not sure what’s going on today…
        • +
      +
      • +
    • I tested moving the CGIAR Fund Council community to the CGIAR historic archive on DSpace Test:
      • +
    +
    $ dspace community-filiator -r -p 10568/83389 -c 10947/2516
+$ dspace community-filiator -s -p 10947/2515 -c 10947/2516
+$ dspace index-discovery -r 10947/2516
+$ dspace index-discovery -r 10947/2515
+$ dspace index-discovery -r 10568/83389
+$ dspace index-discovery
+
      +
    • I think this is the minimal we can do to avoid a full Discovery reindex which is very expensive
      • +
    • I helped Maria resize some massive PDFs for upload to CGSpace using GhostScript prepress mode as I had done before in September, 2023,
      • +
    +

    2023-11-08

    +
      +
    • DSpace 7 Test has very high load again and I see more Java heap space errors in the log
      • +
    +
    # grep -c 'Caused by: java.lang.OutOfMemoryError: Java heap space' /home/dspace7/log/dspace.log-2023-11-07 
+35
+# grep -c 'Caused by: java.lang.OutOfMemoryError: Java heap space' /home/dspace7/log/dspace.log
+7
+
      +
    • I don’t know what is happening… I will increase the heap size from 6144m to 7168m again…
      • +
    + + + + + + +
    + + + +
    + + + + +
    +
    + + + + + + + + + diff --git a/docs/404.html b/docs/404.html index 7430ced5d..1c1abf8fa 100644 --- a/docs/404.html +++ b/docs/404.html @@ -17,7 +17,7 @@ - + @@ -95,6 +95,8 @@
      +
    1. November, 2023
      2. +
    2. October, 2023
    3. September, 2023
      4. @@ -103,8 +105,6 @@
    4. July, 2023
      5. -
    5. June, 2023
      6. -
    diff --git a/docs/categories/index.html b/docs/categories/index.html index bb4219067..e0ba6a03b 100644 --- a/docs/categories/index.html +++ b/docs/categories/index.html @@ -10,14 +10,14 @@ - + - + @@ -84,7 +84,7 @@

    Notes

    -

    by Alan Orth

    +

    by Alan Orth

    Read more → @@ -108,6 +108,8 @@
      +
    1. November, 2023
      2. +
    2. October, 2023
    3. September, 2023
      4. @@ -116,8 +118,6 @@
    4. July, 2023
      5. -
    5. June, 2023
      6. -
    diff --git a/docs/categories/index.xml b/docs/categories/index.xml index 1df9639eb..ff8ebbbd4 100644 --- a/docs/categories/index.xml +++ b/docs/categories/index.xml @@ -6,15 +6,14 @@ Recent content in Categories on CGSpace Notes Hugo -- gohugo.io en-us - Mon, 02 Oct 2023 09:05:36 +0300 + Thu, 02 Nov 2023 12:59:36 +0300 + Notes https://alanorth.github.io/cgspace-notes/categories/notes/ - Mon, 02 Oct 2023 09:05:36 +0300 - + Thu, 02 Nov 2023 12:59:36 +0300 https://alanorth.github.io/cgspace-notes/categories/notes/ - diff --git a/docs/categories/notes/index.html b/docs/categories/notes/index.html index 46e135a2b..811967f47 100644 --- a/docs/categories/notes/index.html +++ b/docs/categories/notes/index.html @@ -10,14 +10,14 @@ - + - + @@ -81,6 +81,36 @@ +
    +
    +

    November, 2023

    +

    by Alan Orth in + Notes + + +

    +
    +

    2023-11-01

    +
      +
    • Work a bit on the ETL pipeline for the CGIAR Climate Change Synthesis +
        +
      • I improved the filtering and wrote some Python using pandas to merge my sources more reliably
        • +
      +
      • +
    +

    2023-11-02

    +
      +
    • Export CGSpace to check missing Initiative collection mappings
      • +
    • Start a harvest on AReS
      • +
    + Read more → +
    + + + + + +

    October, 2023

    @@ -311,32 +341,6 @@ - -
    -
    -

    January, 2023

    -

    by Alan Orth in - Notes - - -

    -
    -

    2023-01-01

    -
      -
    • Apply some more ORCID identifiers to items on CGSpace using my 2022-09-22-add-orcids.csv file -
        -
      • I want to update all ORCID names and refresh them in the database
        • -
      • I see we have some new ones that aren’t in our list if I combine with this file:
        • -
      -
      • -
    - Read more → -
    - - - - -