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Add notes for 2021-04-06
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@ -144,4 +144,182 @@ $ grep downloads /tmp/page*.json | grep -o -E '[0-9]+,' | sed 's/,//' | xargs |
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- Views: 30721
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- Downloads: 10205
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## 2021-04-06
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- Margarita from CCAFS was having problems deleting an item from CGSpace again
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- The error was "Authorization denied for action OBSOLETE (DELETE) on BITSTREAM:bd157345-448e ..."
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- This is the same issue as last month
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- Create a new collection on CGSpace for a new CIP project at Mishel Portilla's request
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- I got a notice that CGSpace was down
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- I didn't see anything strange at first, but there are an insane amount of database connections:
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```console
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$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l
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12413
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```
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- The system journal shows thousands of these messages in the system journal, this is the first one:
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```console
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Apr 06 07:52:13 linode18 tomcat7[556]: Apr 06, 2021 7:52:13 AM org.apache.tomcat.jdbc.pool.ConnectionPool abandon
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```
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- Around that time in the dspace log I see nothing unusual, but maybe these?
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```console
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2021-04-06 07:52:29,409 INFO com.atmire.dspace.cua.CUASolrLoggerServiceImpl @ Updating : 200/127 docs in http://localhost:8081/solr/statistics
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```
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- (BTW what is the deal with the "200/127"? I should send a comment to Atmire)
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- I file a ticket with Atmire: https://tracker.atmire.com/tickets-cgiar-ilri/view-tickets
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- I restarted the PostgreSQL and Tomcat services and now I see less connections, but still WAY high:
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```console
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$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l
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3640
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$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l
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2968
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$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l
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13
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```
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- After ten minutes or so it went back down...
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- And now it's back up in the thousands... I am seeing a lot of stuff in dspace log like this:
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```console
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2021-04-06 11:59:34,364 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717951
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717952
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717953
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717954
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717955
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717956
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717957
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717958
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717959
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717960
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717961
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717962
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717963
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717964
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717965
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717966
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717967
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717968
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717969
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717970
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2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717971
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```
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- I sent some notes and a log to Atmire on our existing issue about the database stuff
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- Also I asked them about the possibility of doing a formal review of Hibernate
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- Falcon 3.0.0 was released so I updated the 3.0.0 branch for dspace-statistics-api and merged it to `v6_x`
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- I also fixed one minor (unrelated) bug in the tests
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- Then I deployed the new version on DSpace Test
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- I had a meeting with Peter and Abenet about CGSpace TODOs
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- CGSpace went down again and the PostgreSQL locks are through the roof:
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```console
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$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l
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12154
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```
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- I don't see any activity on REST API, but in the last four hours there have been 3,500 DSpace sessions:
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```console
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# grep -a -E '2021-04-06 (13|14|15|16|17):' /home/cgspace.cgiar.org/log/dspace.log.2021-04-06 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort | uniq | wc -l
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3547
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```
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- I looked at the same time of day for the past few weeks and it seems to be a normal number of sessions:
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```console
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# for file in /home/cgspace.cgiar.org/log/dspace.log.2021-0{3,4}-*; do grep -a -E "2021-0(3|4)-[0-9]{2} (13|14|15|16|17):" "$file" | grep -o -E 'session_id=[A-Z0-9]{32}' | sort | uniq | wc -l; done
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...
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3572
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4085
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3476
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3128
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2949
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2016
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1839
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4513
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3463
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4425
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3328
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2783
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3898
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3848
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7799
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255
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534
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2755
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599
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4463
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3547
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```
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- What about total number of sessions per day?
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```console
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# for file in /home/cgspace.cgiar.org/log/dspace.log.2021-0{3,4}-*; do echo "$file:"; grep -a -o -E 'session_id=[A-Z0-9]{32}' "$file" | sort | uniq | wc -l; done
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...
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/home/cgspace.cgiar.org/log/dspace.log.2021-03-28:
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11784
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/home/cgspace.cgiar.org/log/dspace.log.2021-03-29:
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15104
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/home/cgspace.cgiar.org/log/dspace.log.2021-03-30:
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19396
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/home/cgspace.cgiar.org/log/dspace.log.2021-03-31:
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32612
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/home/cgspace.cgiar.org/log/dspace.log.2021-04-01:
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26037
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/home/cgspace.cgiar.org/log/dspace.log.2021-04-02:
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14315
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/home/cgspace.cgiar.org/log/dspace.log.2021-04-03:
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12530
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/home/cgspace.cgiar.org/log/dspace.log.2021-04-04:
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13138
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/home/cgspace.cgiar.org/log/dspace.log.2021-04-05:
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16756
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/home/cgspace.cgiar.org/log/dspace.log.2021-04-06:
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12343
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```
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- So it's not the number of sessions... it's something with the workload...
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- I had to step away for an hour or so and when I came back the site was still down and there were still 12,000 locks
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- I restarted postgresql and tomcat7...
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- The locks in PostgreSQL shot up again...
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```console
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$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l
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3447
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$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l
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3527
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$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l
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4582
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```
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- I don't know what the hell is going on
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- While looking at the logs I see that MEL is trying to log into CGSpace's REST API and delete items:
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```console
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34.209.213.122 - - [06/Apr/2021:03:50:46 +0200] "POST /rest/login HTTP/1.1" 401 727 "-" "MEL"
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34.209.213.122 - - [06/Apr/2021:03:50:48 +0200] "DELETE /rest/items/95f52bf1-f082-4e10-ad57-268a76ca18ec/metadata HTTP/1.1" 401 704 "-" "-"
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```
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- I see a few of these per day going back several months
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- Also annoying, I see tons of what look like penetration testing requests from Qualys:
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```console
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2021-04-04 06:35:17,889 INFO org.dspace.authenticate.LDAPAuthentication @ anonymous:session_id=FF1E051BCA7D81CC5A807D85380D81E5:ip_addr=64.39.108.48:failed_login:no DN found for user "'><qss a=X158062356Y1_2Z>
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2021-04-04 06:35:17,889 INFO org.dspace.authenticate.PasswordAuthentication @ anonymous:session_id=FF1E051BCA7D81CC5A807D85380D81E5:ip_addr=64.39.108.48:authenticate:attempting password auth of user="'><qss a=X158062356Y1_2Z>
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2021-04-04 06:35:17,890 INFO org.dspace.app.xmlui.utils.AuthenticationUtil @ anonymous:session_id=FF1E051BCA7D81CC5A807D85380D81E5:ip_addr=64.39.108.48:failed_login:email="'><qss a=X158062356Y1_2Z>, realm=null, result=2
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2021-04-04 06:35:18,145 INFO org.dspace.authenticate.LDAPAuthentication @ anonymous:session_id=FF1E051BCA7D81CC5A807D85380D81E5:ip_addr=64.39.108.48:auth:attempting trivial auth of user=was@qualys.com
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2021-04-04 06:35:18,519 INFO org.dspace.authenticate.LDAPAuthentication @ anonymous:session_id=FF1E051BCA7D81CC5A807D85380D81E5:ip_addr=64.39.108.48:failed_login:no DN found for user was@qualys.com
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2021-04-04 06:35:18,520 INFO org.dspace.authenticate.PasswordAuthentication @ anonymous:session_id=FF1E051BCA7D81CC5A807D85380D81E5:ip_addr=64.39.108.48:authenticate:attempting password auth of user=was@qualys.com
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```
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- I deleted the ilri/AReS repository on GitHub since we haven't updated it in two years
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- All development is happening in https://github.com/ilri/openRXV now
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<!-- vim: set sw=2 ts=2: -->
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|
@ -19,7 +19,7 @@ Also, we found some issues building and running OpenRXV currently due to ecosyst
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<meta property="og:type" content="article" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-03/" />
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<meta property="article:published_time" content="2021-03-01T10:13:54+02:00" />
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<meta property="article:modified_time" content="2021-04-01T09:49:08+03:00" />
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<meta property="article:modified_time" content="2021-04-05T19:36:44+03:00" />
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@ -46,7 +46,7 @@ Also, we found some issues building and running OpenRXV currently due to ecosyst
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"url": "https://alanorth.github.io/cgspace-notes/2021-03/",
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"wordCount": "4452",
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"datePublished": "2021-03-01T10:13:54+02:00",
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"dateModified": "2021-04-01T09:49:08+03:00",
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"dateModified": "2021-04-05T19:36:44+03:00",
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"author": {
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"@type": "Person",
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"name": "Alan Orth"
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|
@ -24,7 +24,7 @@ Perhaps one of the containers crashed, I should have looked closer but I was in
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<meta property="og:type" content="article" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2021-04/" />
|
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<meta property="article:published_time" content="2021-04-01T09:50:54+03:00" />
|
||||
<meta property="article:modified_time" content="2021-04-01T09:50:54+03:00" />
|
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<meta property="article:modified_time" content="2021-04-05T19:36:44+03:00" />
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@ -54,9 +54,9 @@ Perhaps one of the containers crashed, I should have looked closer but I was in
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"@type": "BlogPosting",
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"headline": "April, 2021",
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"url": "https://alanorth.github.io/cgspace-notes/2021-04/",
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"wordCount": "823",
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||||
"wordCount": "1789",
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||||
"datePublished": "2021-04-01T09:50:54+03:00",
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||||
"dateModified": "2021-04-01T09:50:54+03:00",
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||||
"dateModified": "2021-04-05T19:36:44+03:00",
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"author": {
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"@type": "Person",
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"name": "Alan Orth"
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@ -275,6 +275,181 @@ $ grep downloads /tmp/page*.json | grep -o -E '[0-9]+,' | sed 's/,//' | xargs |
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</ul>
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</li>
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</ul>
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<h2 id="2021-04-06">2021-04-06</h2>
|
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<ul>
|
||||
<li>Margarita from CCAFS was having problems deleting an item from CGSpace again
|
||||
<ul>
|
||||
<li>The error was “Authorization denied for action OBSOLETE (DELETE) on BITSTREAM:bd157345-448e …”</li>
|
||||
<li>This is the same issue as last month</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li>Create a new collection on CGSpace for a new CIP project at Mishel Portilla’s request</li>
|
||||
<li>I got a notice that CGSpace was down
|
||||
<ul>
|
||||
<li>I didn’t see anything strange at first, but there are an insane amount of database connections:</li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
<pre><code class="language-console" data-lang="console">$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l
|
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12413
|
||||
</code></pre><ul>
|
||||
<li>The system journal shows thousands of these messages in the system journal, this is the first one:</li>
|
||||
</ul>
|
||||
<pre><code class="language-console" data-lang="console">Apr 06 07:52:13 linode18 tomcat7[556]: Apr 06, 2021 7:52:13 AM org.apache.tomcat.jdbc.pool.ConnectionPool abandon
|
||||
</code></pre><ul>
|
||||
<li>Around that time in the dspace log I see nothing unusual, but maybe these?</li>
|
||||
</ul>
|
||||
<pre><code class="language-console" data-lang="console">2021-04-06 07:52:29,409 INFO com.atmire.dspace.cua.CUASolrLoggerServiceImpl @ Updating : 200/127 docs in http://localhost:8081/solr/statistics
|
||||
</code></pre><ul>
|
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<li>(BTW what is the deal with the “200/127”? I should send a comment to Atmire)
|
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<ul>
|
||||
<li>I file a ticket with Atmire: <a href="https://tracker.atmire.com/tickets-cgiar-ilri/view-tickets">https://tracker.atmire.com/tickets-cgiar-ilri/view-tickets</a></li>
|
||||
</ul>
|
||||
</li>
|
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<li>I restarted the PostgreSQL and Tomcat services and now I see less connections, but still WAY high:</li>
|
||||
</ul>
|
||||
<pre><code class="language-console" data-lang="console">$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l
|
||||
3640
|
||||
$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l
|
||||
2968
|
||||
$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l
|
||||
13
|
||||
</code></pre><ul>
|
||||
<li>After ten minutes or so it went back down…</li>
|
||||
<li>And now it’s back up in the thousands… I am seeing a lot of stuff in dspace log like this:</li>
|
||||
</ul>
|
||||
<pre><code class="language-console" data-lang="console">2021-04-06 11:59:34,364 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717951
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717952
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717953
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717954
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717955
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717956
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717957
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717958
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717959
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717960
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717961
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717962
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717963
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717964
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717965
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717966
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717967
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717968
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717969
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717970
|
||||
2021-04-06 11:59:34,365 INFO org.dspace.content.MetadataValueServiceImpl @ user.hidden@cgiar.org:session_id=65F32E67CE8E347F64EFB5EB4E349B9B:delete_metadata_value: metadata_value_id=5717971
|
||||
</code></pre><ul>
|
||||
<li>I sent some notes and a log to Atmire on our existing issue about the database stuff
|
||||
<ul>
|
||||
<li>Also I asked them about the possibility of doing a formal review of Hibernate</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li>Falcon 3.0.0 was released so I updated the 3.0.0 branch for dspace-statistics-api and merged it to <code>v6_x</code>
|
||||
<ul>
|
||||
<li>I also fixed one minor (unrelated) bug in the tests</li>
|
||||
<li>Then I deployed the new version on DSpace Test</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li>I had a meeting with Peter and Abenet about CGSpace TODOs</li>
|
||||
<li>CGSpace went down again and the PostgreSQL locks are through the roof:</li>
|
||||
</ul>
|
||||
<pre><code class="language-console" data-lang="console">$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l
|
||||
12154
|
||||
</code></pre><ul>
|
||||
<li>I don’t see any activity on REST API, but in the last four hours there have been 3,500 DSpace sessions:</li>
|
||||
</ul>
|
||||
<pre><code class="language-console" data-lang="console"># grep -a -E '2021-04-06 (13|14|15|16|17):' /home/cgspace.cgiar.org/log/dspace.log.2021-04-06 | grep -o -E 'session_id=[A-Z0-9]{32}' | sort | uniq | wc -l
|
||||
3547
|
||||
</code></pre><ul>
|
||||
<li>I looked at the same time of day for the past few weeks and it seems to be a normal number of sessions:</li>
|
||||
</ul>
|
||||
<pre><code class="language-console" data-lang="console"># for file in /home/cgspace.cgiar.org/log/dspace.log.2021-0{3,4}-*; do grep -a -E "2021-0(3|4)-[0-9]{2} (13|14|15|16|17):" "$file" | grep -o -E 'session_id=[A-Z0-9]{32}' | sort | uniq | wc -l; done
|
||||
...
|
||||
3572
|
||||
4085
|
||||
3476
|
||||
3128
|
||||
2949
|
||||
2016
|
||||
1839
|
||||
4513
|
||||
3463
|
||||
4425
|
||||
3328
|
||||
2783
|
||||
3898
|
||||
3848
|
||||
7799
|
||||
255
|
||||
534
|
||||
2755
|
||||
599
|
||||
4463
|
||||
3547
|
||||
</code></pre><ul>
|
||||
<li>What about total number of sessions per day?</li>
|
||||
</ul>
|
||||
<pre><code class="language-console" data-lang="console"># for file in /home/cgspace.cgiar.org/log/dspace.log.2021-0{3,4}-*; do echo "$file:"; grep -a -o -E 'session_id=[A-Z0-9]{32}' "$file" | sort | uniq | wc -l; done
|
||||
...
|
||||
/home/cgspace.cgiar.org/log/dspace.log.2021-03-28:
|
||||
11784
|
||||
/home/cgspace.cgiar.org/log/dspace.log.2021-03-29:
|
||||
15104
|
||||
/home/cgspace.cgiar.org/log/dspace.log.2021-03-30:
|
||||
19396
|
||||
/home/cgspace.cgiar.org/log/dspace.log.2021-03-31:
|
||||
32612
|
||||
/home/cgspace.cgiar.org/log/dspace.log.2021-04-01:
|
||||
26037
|
||||
/home/cgspace.cgiar.org/log/dspace.log.2021-04-02:
|
||||
14315
|
||||
/home/cgspace.cgiar.org/log/dspace.log.2021-04-03:
|
||||
12530
|
||||
/home/cgspace.cgiar.org/log/dspace.log.2021-04-04:
|
||||
13138
|
||||
/home/cgspace.cgiar.org/log/dspace.log.2021-04-05:
|
||||
16756
|
||||
/home/cgspace.cgiar.org/log/dspace.log.2021-04-06:
|
||||
12343
|
||||
</code></pre><ul>
|
||||
<li>So it’s not the number of sessions… it’s something with the workload…</li>
|
||||
<li>I had to step away for an hour or so and when I came back the site was still down and there were still 12,000 locks
|
||||
<ul>
|
||||
<li>I restarted postgresql and tomcat7…</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li>The locks in PostgreSQL shot up again…</li>
|
||||
</ul>
|
||||
<pre><code class="language-console" data-lang="console">$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l
|
||||
3447
|
||||
$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l
|
||||
3527
|
||||
$ psql -c 'SELECT * FROM pg_locks pl LEFT JOIN pg_stat_activity psa ON pl.pid = psa.pid;' | wc -l
|
||||
4582
|
||||
</code></pre><ul>
|
||||
<li>I don’t know what the hell is going on</li>
|
||||
<li>While looking at the logs I see that MEL is trying to log into CGSpace’s REST API and delete items:</li>
|
||||
</ul>
|
||||
<pre><code class="language-console" data-lang="console">34.209.213.122 - - [06/Apr/2021:03:50:46 +0200] "POST /rest/login HTTP/1.1" 401 727 "-" "MEL"
|
||||
34.209.213.122 - - [06/Apr/2021:03:50:48 +0200] "DELETE /rest/items/95f52bf1-f082-4e10-ad57-268a76ca18ec/metadata HTTP/1.1" 401 704 "-" "-"
|
||||
</code></pre><ul>
|
||||
<li>I see a few of these per day going back several months</li>
|
||||
<li>Also annoying, I see tons of what look like penetration testing requests from Qualys:</li>
|
||||
</ul>
|
||||
<pre><code class="language-console" data-lang="console">2021-04-04 06:35:17,889 INFO org.dspace.authenticate.LDAPAuthentication @ anonymous:session_id=FF1E051BCA7D81CC5A807D85380D81E5:ip_addr=64.39.108.48:failed_login:no DN found for user "'><qss a=X158062356Y1_2Z>
|
||||
2021-04-04 06:35:17,889 INFO org.dspace.authenticate.PasswordAuthentication @ anonymous:session_id=FF1E051BCA7D81CC5A807D85380D81E5:ip_addr=64.39.108.48:authenticate:attempting password auth of user="'><qss a=X158062356Y1_2Z>
|
||||
2021-04-04 06:35:17,890 INFO org.dspace.app.xmlui.utils.AuthenticationUtil @ anonymous:session_id=FF1E051BCA7D81CC5A807D85380D81E5:ip_addr=64.39.108.48:failed_login:email="'><qss a=X158062356Y1_2Z>, realm=null, result=2
|
||||
2021-04-04 06:35:18,145 INFO org.dspace.authenticate.LDAPAuthentication @ anonymous:session_id=FF1E051BCA7D81CC5A807D85380D81E5:ip_addr=64.39.108.48:auth:attempting trivial auth of user=was@qualys.com
|
||||
2021-04-04 06:35:18,519 INFO org.dspace.authenticate.LDAPAuthentication @ anonymous:session_id=FF1E051BCA7D81CC5A807D85380D81E5:ip_addr=64.39.108.48:failed_login:no DN found for user was@qualys.com
|
||||
2021-04-04 06:35:18,520 INFO org.dspace.authenticate.PasswordAuthentication @ anonymous:session_id=FF1E051BCA7D81CC5A807D85380D81E5:ip_addr=64.39.108.48:authenticate:attempting password auth of user=was@qualys.com
|
||||
</code></pre><ul>
|
||||
<li>I deleted the ilri/AReS repository on GitHub since we haven’t updated it in two years
|
||||
<ul>
|
||||
<li>All development is happening in <a href="https://github.com/ilri/openRXV">https://github.com/ilri/openRXV</a> now</li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
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<meta property="og:updated_time" content="2021-04-05T19:36:44+03:00" />
|
||||
|
||||
|
||||
|
||||
|
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2021-04-01T09:50:54+03:00" />
|
||||
<meta property="og:updated_time" content="2021-04-05T19:36:44+03:00" />
|
||||
|
||||
|
||||
|
||||
|
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2021-04-01T09:50:54+03:00" />
|
||||
<meta property="og:updated_time" content="2021-04-05T19:36:44+03:00" />
|
||||
|
||||
|
||||
|
||||
|
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2021-04-01T09:50:54+03:00" />
|
||||
<meta property="og:updated_time" content="2021-04-05T19:36:44+03:00" />
|
||||
|
||||
|
||||
|
||||
|
@ -10,7 +10,7 @@
|
||||
<meta property="og:description" content="Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository." />
|
||||
<meta property="og:type" content="website" />
|
||||
<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/posts/" />
|
||||
<meta property="og:updated_time" content="2021-04-01T09:50:54+03:00" />
|
||||
<meta property="og:updated_time" content="2021-04-05T19:36:44+03:00" />
|
||||
|
||||
|
||||
|
||||
|
@ -3,22 +3,22 @@
|
||||
xmlns:xhtml="http://www.w3.org/1999/xhtml">
|
||||
<url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/2021-04/</loc>
|
||||
<lastmod>2021-04-01T09:50:54+03:00</lastmod>
|
||||
<lastmod>2021-04-05T19:36:44+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/categories/</loc>
|
||||
<lastmod>2021-04-01T09:50:54+03:00</lastmod>
|
||||
<lastmod>2021-04-05T19:36:44+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/</loc>
|
||||
<lastmod>2021-04-01T09:50:54+03:00</lastmod>
|
||||
<lastmod>2021-04-05T19:36:44+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/categories/notes/</loc>
|
||||
<lastmod>2021-04-01T09:50:54+03:00</lastmod>
|
||||
<lastmod>2021-04-05T19:36:44+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/posts/</loc>
|
||||
<lastmod>2021-04-01T09:50:54+03:00</lastmod>
|
||||
<lastmod>2021-04-05T19:36:44+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/2021-03/</loc>
|
||||
<lastmod>2021-04-01T09:49:08+03:00</lastmod>
|
||||
<lastmod>2021-04-05T19:36:44+03:00</lastmod>
|
||||
</url><url>
|
||||
<loc>https://alanorth.github.io/cgspace-notes/cgspace-cgcorev2-migration/</loc>
|
||||
<lastmod>2021-03-30T09:56:38+03:00</lastmod>
|
||||
|
Loading…
Reference in New Issue
Block a user