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A bit of work to clean up duplicate DOIs on CGSpace
A handful of book chapters, working papers, and journal articles using the wrong DOI
I tried to delete all users who have been inactive since six years ago (July 1, 2018):
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A bit of work to clean up duplicate DOIs on CGSpace
A handful of book chapters, working papers, and journal articles using the wrong DOI
I tried to delete all users who have been inactive since six years ago (July 1, 2018):
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<h1 class="blog-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description" dir="auto">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
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<h2 class="blog-post-title" dir="auto"><a href="https://alanorth.github.io/cgspace-notes/2024-07/">July, 2024</a></h2>
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<time datetime="2024-07-01T09:37:00+03:00">Mon Jul 01, 2024</time>
in
<span class="fas fa-folder" aria-hidden="true"></span>&nbsp;<a href="/categories/notes/" rel="category tag">Notes</a>
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<h2 id="2024-07-01">2024-07-01</h2>
<ul>
<li>A bit of work to clean up duplicate DOIs on CGSpace
<ul>
<li>A handful of book chapters, working papers, and journal articles using the wrong DOI</li>
</ul>
</li>
<li>I tried to delete all users who have been inactive since six years ago (July 1, 2018):</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>$ dspace dsrun org.dspace.eperson.Groomer -a -b 07/01/2018 -d
</span></span></code></pre></div><ul>
<li>File an issue on DSpace GitHub: <a href="https://github.com/DSpace/DSpace/issues/9675">Allow configuring disallowed domains for self registration</a></li>
</ul>
Update notes for 2024-07-11
2024-07-11 12:08:22 +02:00
<h2 id="2024-07-11">2024-07-11</h2>
<ul>
<li>Minor fixes to normalize the IFPRI CONTENTdm URLs in provenance fields:</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>dspace=# BEGIN;
</span></span><span style="display:flex;"><span>BEGIN
</span></span><span style="display:flex;"><span>dspace=*# UPDATE metadatavalue SET text_value = replace(text_value, &#39;cdm/ref&#39;, &#39;digital&#39;) WHERE text_value LIKE &#39;%CONTENTdm%cdm/ref/%&#39;;
</span></span><span style="display:flex;"><span>UPDATE 1876
</span></span><span style="display:flex;"><span>dspace=*# UPDATE metadatavalue SET text_value = replace(text_value, &#39;CONTENTdm: &#39;, &#39;CONTENTdm: &#39;) WHERE text_value LIKE &#39;%CONTENTdm: %&#39;;
</span></span><span style="display:flex;"><span>UPDATE 21
</span></span><span style="display:flex;"><span>dspace=*# COMMIT;
</span></span><span style="display:flex;"><span>COMMIT
</span></span></code></pre></div><ul>
<li>Then export a new list of CONTENTdm redirects, excluding withdrawn items:</li>
</ul>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>dspace= ☘ \COPY (SELECT m.text_value, h.handle FROM metadatavalue m JOIN handle h on m.dspace_object_id = h.resource_id WHERE m.metadata_field_id=28 AND m.text_value LIKE &#39;%URL from IFPRI CONTENTdm%&#39; AND h.resource_type_id=2 AND m.dspace_object_id IN (SELECT uuid FROM item WHERE in_archive AND NOT withdrawn)) to /tmp/ifpri.csv CSV HEADER;
</span></span><span style="display:flex;"><span>COPY 8568
</span></span></code></pre></div><ul>
<li>Similarly, get a list of withdrawn item redirects:</li>
</ul>
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<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-console" data-lang="console"><span style="display:flex;"><span>dspace= ☘ \COPY (SELECT m.text_value AS handle_from, h.handle AS handle_to FROM metadatavalue m JOIN handle h on m.dspace_object_id = h.resource_id WHERE m.metadata_field_id=181 AND h.resource_type_id=2 AND h.resource_id IN (SELECT uuid FROM item WHERE in_archive AND NOT withdrawn)) to /tmp/handle-redirects.csv CSV HEADER;
Update notes for 2024-07-11
2024-07-11 12:08:22 +02:00
</span></span><span style="display:flex;"><span>COPY 396
Update notes
2024-08-07 17:54:13 +02:00
</span></span></code></pre></div><h2 id="2024-07-18">2024-07-18</h2>
<ul>
<li>I experimented with adding a regular expression to validate DOIs to the submission form
<ul>
<li>It is a slightly modified version of the one found here: <a href="https://stackoverflow.com/questions/27910/finding-a-doi-in-a-document-or-page">https://stackoverflow.com/questions/27910/finding-a-doi-in-a-document-or-page</a></li>
<li>I decided it will probably be confusing to people and will have limited benefit, since we are normalizing most forms of DOIs to our preferred form after submission anyway</li>
</ul>
</li>
</ul>
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<h4>Recent Posts</h4>
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2024-12-04 14:27:49 +01:00
<li><a href="/cgspace-notes/2024-12/">December, 2024</a></li>
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2024-11-19 08:40:23 +01:00
<li><a href="/cgspace-notes/2024-11/">November, 2024</a></li>
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2024-10-03 10:51:44 +02:00
<li><a href="/cgspace-notes/2024-10/">October, 2024</a></li>
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2024-09-09 09:20:09 +02:00
<li><a href="/cgspace-notes/2024-09/">September, 2024</a></li>
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<li><a href="/cgspace-notes/2024-08/">August, 2024</a></li>
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<h4>Links</h4>
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<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
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