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239 lines
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<meta property="og:title" content="June, 2017" />
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<meta property="og:description" content="2017-06-01 After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we’ll create a new sub-community for Phase II and create collections for the research themes there The current “Research Themes” community will be renamed to “WLE Phase I Research Themes” Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg." />
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<meta property="og:type" content="article" />
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<meta property="og:url" content="https://alanorth.github.io/cgspace-notes/2017-06/" />
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<meta property="article:published_time" content="2017-06-01T10:14:52+03:00"/>
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<meta property="article:modified_time" content="2017-06-04T09:12:02+03:00"/>
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<meta name="twitter:text:title" content="June, 2017"/>
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<meta name="twitter:title" content="June, 2017"/>
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<meta name="twitter:description" content="2017-06-01 After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes The cg.identifier.wletheme field will be used for both Phase I and Phase II Research Themes Then we’ll create a new sub-community for Phase II and create collections for the research themes there The current “Research Themes” community will be renamed to “WLE Phase I Research Themes” Tagged all items in the current Phase I collections with their appropriate themes Create pull request to add Phase II research themes to the submission form: #328 Add cg."/>
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"@context": "http://schema.org",
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"@type": "BlogPosting",
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"headline": "June, 2017",
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"url": "https://alanorth.github.io/cgspace-notes/2017-06/",
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"wordCount": "430",
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"datePublished": "2017-06-01T10:14:52+03:00",
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"dateModified": "2017-06-04T09:12:02+03:00",
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"author": {
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"@type": "Person",
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"name": "Alan Orth"
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"keywords": "Notes"
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<link rel="canonical" href="https://alanorth.github.io/cgspace-notes/2017-06/">
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<title>June, 2017 | CGSpace Notes</title>
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<link href="https://alanorth.github.io/cgspace-notes/css/style.css" rel="stylesheet" integrity="sha384-j3n8sYdzztDYtVc80KiiuOXoCg5Bjz0zYyLGzDMW8RbfA0u5djbF0GO3bVOPoLyN" crossorigin="anonymous">
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<nav class="nav blog-nav">
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<a class="nav-link " href="https://alanorth.github.io/cgspace-notes/">Home</a>
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<header class="blog-header">
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<div class="container">
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<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
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<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
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<article class="blog-post">
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<header>
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<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-06/">June, 2017</a></h2>
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<p class="blog-post-meta"><time datetime="2017-06-01T10:14:52+03:00">Thu Jun 01, 2017</time> by Alan Orth in
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<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
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</p>
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</header>
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<h2 id="2017-06-01">2017-06-01</h2>
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<ul>
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<li>After discussion with WLE and CGSpace content people, we decided to just add one metadata field for the WLE Research Themes</li>
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<li>The <code>cg.identifier.wletheme</code> field will be used for both Phase I and Phase II Research Themes</li>
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<li>Then we’ll create a new sub-community for Phase II and create collections for the research themes there</li>
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<li>The current “Research Themes” community will be renamed to “WLE Phase I Research Themes”</li>
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<li>Tagged all items in the current Phase I collections with their appropriate themes</li>
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<li>Create pull request to add Phase II research themes to the submission form: <a href="https://github.com/ilri/DSpace/pull/328">#328</a></li>
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<li>Add <code>cg.subject.system</code> to CGSpace metadata registry, for subject from the upcoming CGIAR Library migration</li>
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</ul>
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<h2 id="2017-06-04">2017-06-04</h2>
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<ul>
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<li>After adding <code>cg.identifier.wletheme</code> to 1106 WLE items I can see the field on XMLUI but not in REST!</li>
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<li>Strangely it happens on DSpace Test AND on CGSpace!</li>
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<li>I tried to re-index Discovery but it didn’t fix it</li>
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<li>Run all system updates on DSpace Test and reboot the server</li>
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<li>After rebooting the server (and therefore restarting Tomcat) the new metadata field is available</li>
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<li>I’ve sent a message to the dspace-tech mailing list to ask if this is a bug and whether I should file a Jira ticket</li>
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</ul>
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<h2 id="2016-06-05">2016-06-05</h2>
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<ul>
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<li>Rename WLE’s “Research Themes” sub-community to “WLE Phase I Research Themes” on DSpace Test so Macaroni Bros can continue their testing</li>
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<li>Macaroni Bros tested it and said it’s fine, so I renamed it on CGSpace as well</li>
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<li>Working on how to automate the extraction of the CIAT Book chapters, doing some magic in OpenRefine to extract page from–to from cg.identifier.url and dc.format.extent, respectively:
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<ul>
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<li>cg.identifier.url: <code>value.split("page=", "")[1]</code></li>
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<li>dc.format.extent: <code>value.replace("p. ", "").split("-")[1].toNumber() - value.replace("p. ", "").split("-")[0].toNumber()</code></li>
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</ul></li>
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<li>Finally, after some filtering to see which small outliers there were (based on dc.format.extent using “p. 1-14” vs “29 p.”), create a new column with last page number:
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<ul>
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<li><code>cells["dc.page.from"].value.toNumber() + cells["dc.format.pages"].value.toNumber()</code></li>
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</ul></li>
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<li>Then create a new, unique file name to be used in the output, based on a SHA1 of the dc.title and with a description:
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<ul>
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<li>dc.page.to: <code>value.split(" ")[0].replace(",","").toLowercase() + "-" + sha1(value).get(1,9) + ".pdf__description:" + cells["dc.type"].value</code></li>
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</ul></li>
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<li>Start processing 769 records after filtering the following (there are another 159 records that have some other format, or for example they have their own PDF which I will process later), using a modified <code>generate-thumbnails.py</code> script to read certain fields and then pass to GhostScript:
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<ul>
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<li>cg.identifier.url: <code>value.contains("page=")</code></li>
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<li>dc.format.extent: <code>or(value.contains("p. "),value.contains(" p."))</code></li>
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<li>Command like: <code>$ gs -dNOPAUSE -dBATCH -dFirstPage=14 -dLastPage=27 -sDEVICE=pdfwrite -sOutputFile=beans.pdf -f 12605-1.pdf</code></li>
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</ul></li>
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<li>17 of the items have issues with incorrect page number ranges, and upon closer inspection they do not appear in the referenced PDF</li>
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<li>I’ve flagged them and proceeded without them</li>
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</ul>
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</article>
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</div> <!-- /.blog-main -->
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<aside class="col-sm-3 offset-sm-1 blog-sidebar">
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<section class="sidebar-module">
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<h4>Recent Posts</h4>
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<ol class="list-unstyled">
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<li><a href="/cgspace-notes/2017-06/">June, 2017</a></li>
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<li><a href="/cgspace-notes/2017-05/">May, 2017</a></li>
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<li><a href="/cgspace-notes/2017-04/">April, 2017</a></li>
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<li><a href="/cgspace-notes/2017-03/">March, 2017</a></li>
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<li><a href="/cgspace-notes/2017-02/">February, 2017</a></li>
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</ol>
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</section>
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<section class="sidebar-module">
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<h4>Links</h4>
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<ol class="list-unstyled">
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<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
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<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
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<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
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</ol>
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</section>
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</aside>
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</div> <!-- /.row -->
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</div> <!-- /.container -->
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<footer class="blog-footer">
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<p>
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Blog template created by <a href="https://twitter.com/mdo">@mdo</a>, ported to Hugo by <a href='https://twitter.com/mralanorth'>@mralanorth</a>.
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</p>
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<p>
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<a href="#">Back to top</a>
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