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Peter emailed to point out that many items in the ILRI archive collection have multiple handles:
http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine
Update notes
2017-10-01 12:44:37 +02:00
Add Katherine Lutz to the groups for content sumission and edit steps of the CGIAR System collections
Add notes for 2017-10-01
2017-10-01 07:13:31 +02:00
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Peter emailed to point out that many items in the ILRI archive collection have multiple handles:
http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine
Update notes
2017-10-01 12:44:37 +02:00
Add Katherine Lutz to the groups for content sumission and edit steps of the CGIAR System collections
Add notes for 2017-10-01
2017-10-01 07:13:31 +02:00
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<h1 class="blog-title"><a href="https://alanorth.github.io/cgspace-notes/" rel="home">CGSpace Notes</a></h1>
<p class="lead blog-description">Documenting day-to-day work on the <a href="https://cgspace.cgiar.org">CGSpace</a> repository.</p>
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<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2017-10/">October, 2017</a></h2>
<p class="blog-post-meta"><time datetime="2017-10-01T08:07:54&#43;03:00">Sun Oct 01, 2017</time> by Alan Orth in
<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>
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<h2 id="2017-10-01">2017-10-01</h2>
<ul>
<li>Peter emailed to point out that many items in the <a href="https://cgspace.cgiar.org/handle/10568/2703">ILRI archive collection</a> have multiple handles:</li>
</ul>
<pre><code>http://hdl.handle.net/10568/78495||http://hdl.handle.net/10568/79336
</code></pre>
<ul>
<li>There appears to be a pattern but I&rsquo;ll have to look a bit closer and try to clean them up automatically, either in SQL or in OpenRefine</li>
Update notes
2017-10-01 12:44:37 +02:00
<li>Add Katherine Lutz to the groups for content sumission and edit steps of the CGIAR System collections</li>
Add notes for 2017-10-01
2017-10-01 07:13:31 +02:00
</ul>
<p></p>
Add notes for 2017-10-02
2017-10-02 07:14:44 +02:00
<h2 id="2017-10-02">2017-10-02</h2>
<ul>
<li>Peter Ballantyne said he was having problems logging into CGSpace with &ldquo;both&rdquo; of his accounts (CGIAR LDAP and personal, apparently)</li>
<li>I looked in the logs and saw some LDAP lookup failures due to timeout but also strangely a &ldquo;no DN found&rdquo; error:</li>
</ul>
<pre><code>2017-10-01 20:24:57,928 WARN org.dspace.authenticate.LDAPAuthentication @ anonymous:session_id=CA0AA5FEAEA8805645489404CDCE9594:ip_addr=41.204.190.40:ldap_attribute_lookup:type=failed_search javax.naming.CommunicationException\colon; svcgroot2.cgiarad.org\colon;3269 [Root exception is java.net.ConnectException\colon; Connection timed out (Connection timed out)]
2017-10-01 20:22:37,982 INFO org.dspace.authenticate.LDAPAuthentication @ anonymous:session_id=CA0AA5FEAEA8805645489404CDCE9594:ip_addr=41.204.190.40:failed_login:no DN found for user pballantyne
</code></pre>
<ul>
Update notes for 2017-10-02
2017-10-02 07:31:19 +02:00
<li>I thought maybe his account had expired (seeing as it&rsquo;s was the first of the month) but he says he was finally able to log in today</li>
<li>The logs for yesterday show fourteen errors related to LDAP auth failures:</li>
</ul>
<pre><code>$ grep -c &quot;ldap_authentication:type=failed_auth&quot; dspace.log.2017-10-01
14
</code></pre>
<ul>
<li>For what it&rsquo;s worth, there are no errors on any other recent days, so it must have been some network issue on Linode or CGNET&rsquo;s LDAP server</li>
Update notes for 2017-10-02
2017-10-02 16:29:23 +02:00
<li>Linode emailed to say that linode578611 (DSpace Test) needs to migrate to a new host for a security update so I initiated the migration immediately rather than waiting for the scheduled time in two weeks</li>
Add notes for 2017-10-02
2017-10-02 07:14:44 +02:00
</ul>
Add notes for 2017-10-04
2017-10-04 10:29:41 +02:00
<h2 id="2017-10-04">2017-10-04</h2>
<ul>
<li>Twice in the last twenty-four hours Linode has alerted about high CPU usage on CGSpace (linode2533629)</li>
<li>Communicate with Sam from the CGIAR System Organization about some broken links coming from their CGIAR Library domain to CGSpace</li>
<li>The first is a link to a browse page that should be handled better in nginx:</li>
</ul>
<pre><code>http://library.cgiar.org/browse?value=Intellectual%20Assets%20Reports&amp;type=subject → https://cgspace.cgiar.org/browse?value=Intellectual%20Assets%20Reports&amp;type=subject
</code></pre>
<ul>
<li>We&rsquo;ll need to check for browse links and handle them properly, including swapping the <code>subject</code> parameter for <code>systemsubject</code> (which doesn&rsquo;t exist in Discovery yet, but we&rsquo;ll need to add it) as we have moved their poorly curated subjects from <code>dc.subject</code> to <code>cg.subject.system</code></li>
<li>The second link was a direct link to a bitstream which has broken due to the sequence being updated, so I told him he should link to the handle of the item instead</li>
Update notes for 2017-10-04
2017-10-04 14:56:39 +02:00
<li>Help Sisay proof sixty-two IITA records on DSpace Test</li>
<li>Lots of inconsistencies and errors in subjects, dc.format.extent, regions, countries</li>
Update notes for 2017-10-04
2017-10-04 16:06:10 +02:00
<li>Merge the Discovery search changes for ISI Journal (<a href="https://github.com/ilri/DSpace/pull/341">#341</a>)</li>
Add notes for 2017-10-04
2017-10-04 10:29:41 +02:00
</ul>
Update notes for 2017-10-05
2017-10-05 17:36:49 +02:00
<h2 id="2017-10-05">2017-10-05</h2>
<ul>
<li>Twice in the past twenty-four hours Linode has warned that CGSpace&rsquo;s outbound traffic rate was exceeding the notification threshold</li>
<li>I had a look at yesterday&rsquo;s OAI and REST logs in <code>/var/log/nginx</code> but didn&rsquo;t see anything unusual:</li>
</ul>
<pre><code># awk '{print $1}' /var/log/nginx/rest.log.1 | sort -n | uniq -c | sort -h | tail -n 10
141 157.55.39.240
145 40.77.167.85
162 66.249.66.92
181 66.249.66.95
211 66.249.66.91
312 66.249.66.94
384 66.249.66.90
1495 50.116.102.77
3904 70.32.83.92
9904 45.5.184.196
# awk '{print $1}' /var/log/nginx/oai.log.1 | sort -n | uniq -c | sort -h | tail -n 10
5 66.249.66.71
6 66.249.66.67
6 68.180.229.31
8 41.84.227.85
8 66.249.66.92
17 66.249.66.65
24 66.249.66.91
38 66.249.66.95
69 66.249.66.90
148 66.249.66.94
</code></pre>
<ul>
<li>Working on the nginx redirects for CGIAR Library</li>
<li>We should start using 301 redirects and also allow for <code>/sitemap</code> to work on the library.cgiar.org domain so the CGIAR System Organization people can update their Google Search Console and allow Google to find their content in a structured way</li>
<li>Remove eleven occurrences of <code>ACP</code> in IITA&rsquo;s <code>cg.coverage.region</code> using the Atmire batch edit module from Discovery</li>
<li>Need to investigate how we can verify the library.cgiar.org using the HTML or DNS methods</li>
Update notes for 2017-10-05
2017-10-06 02:10:53 +02:00
<li>Run corrections on 143 ILRI Archive items that had two <code>dc.identifier.uri</code> values (Handle) that Peter had pointed out earlier this week</li>
<li>I used OpenRefine to isolate them and then fixed and re-imported them into CGSpace</li>
Update notes for 2017-10-05
2017-10-06 02:11:56 +02:00
<li>I manually checked a dozen of them and it appeared that the correct handle was always the second one, so I just deleted the first one</li>
Update notes for 2017-10-05
2017-10-05 17:36:49 +02:00
</ul>
Add notes for 2017-10-06
2017-10-06 11:22:46 +02:00
<h2 id="2017-10-06">2017-10-06</h2>
<ul>
<li>I saw a nice tweak to thumbnail presentation on the Cardiff Metropolitan University DSpace: <a href="https://repository.cardiffmet.ac.uk/handle/10369/8780">https://repository.cardiffmet.ac.uk/handle/10369/8780</a></li>
<li>It adds a subtle border and box shadow, before and after:</li>
</ul>
<p><img src="/cgspace-notes/2017/10/dspace-thumbnail-original.png" alt="Original flat thumbnails" />
<img src="/cgspace-notes/2017/10/dspace-thumbnail-box-shadow.png" alt="Tweaked with border and box shadow" /></p>
<ul>
<li>I&rsquo;ll post it to the Yammer group to see what people think</li>
Update notes for 2017-10-06
2017-10-06 18:27:58 +02:00
<li>I figured out at way to do the HTML verification for Google Search console for library.cgiar.org</li>
<li>We can drop the HTML file in their XMLUI theme folder and it will get copied to the webapps directory during build/install</li>
<li>Then we add an nginx alias for that URL in the library.cgiar.org vhost</li>
<li>This method is kinda a hack but at least we can put all the pieces into git to be reproducible</li>
<li>I will tell Tunji to send me the verification file</li>
Add notes for 2017-10-06
2017-10-06 11:22:46 +02:00
</ul>
Add notes for 2017-10-01
2017-10-01 07:13:31 +02:00
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<h4>Recent Posts</h4>
<ol class="list-unstyled">
<li><a href="/cgspace-notes/2017-10/">October, 2017</a></li>
<li><a href="/cgspace-notes/cgiar-library-migration/">CGIAR Library Migration</a></li>
<li><a href="/cgspace-notes/2017-09/">September, 2017</a></li>
<li><a href="/cgspace-notes/2017-08/">August, 2017</a></li>
<li><a href="/cgspace-notes/2017-07/">July, 2017</a></li>
</ol>
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<h4>Links</h4>
<ol class="list-unstyled">
<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>
<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>
<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>
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