cgspace-notes/docs/2018-06/index.html

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Test the DSpace 5.8 module upgrades from Atmire (#378)


There seems to be a problem with the CUA and L&amp;R versions in pom.xml because they are using SNAPSHOT and it doesn&rsquo;t build

I added the new CCAFS Phase II Project Tag PII-FP1_PACCA2 and merged it into the 5_x-prod branch (#379)
I proofed and tested the ILRI author corrections that Peter sent back to me this week:


$ ./fix-metadata-values.py -i /tmp/2018-05-30-Correct-660-authors.csv -db dspace -u dspace -p &#39;fuuu&#39; -f dc.contributor.author -t correct -m 3 -n


I think a sane proofing workflow in OpenRefine is to apply the custom text facets for check/delete/remove and illegal characters that I developed in March, 2018
Time to index ~70,000 items on CGSpace:


$ time schedtool -D -e ionice -c2 -n7 nice -n19 [dspace]/bin/dspace index-discovery -b                                  

real    74m42.646s
user    8m5.056s
sys     2m7.289s


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Test the DSpace 5.8 module upgrades from Atmire (#378)


There seems to be a problem with the CUA and L&amp;R versions in pom.xml because they are using SNAPSHOT and it doesn&rsquo;t build

I added the new CCAFS Phase II Project Tag PII-FP1_PACCA2 and merged it into the 5_x-prod branch (#379)
I proofed and tested the ILRI author corrections that Peter sent back to me this week:


$ ./fix-metadata-values.py -i /tmp/2018-05-30-Correct-660-authors.csv -db dspace -u dspace -p &#39;fuuu&#39; -f dc.contributor.author -t correct -m 3 -n


I think a sane proofing workflow in OpenRefine is to apply the custom text facets for check/delete/remove and illegal characters that I developed in March, 2018
Time to index ~70,000 items on CGSpace:


$ time schedtool -D -e ionice -c2 -n7 nice -n19 [dspace]/bin/dspace index-discovery -b                                  

real    74m42.646s
user    8m5.056s
sys     2m7.289s


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    <h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-06/">June, 2018</a></h2>
    <p class="blog-post-meta"><time datetime="2018-06-04T19:49:54-07:00">Mon Jun 04, 2018</time> by Alan Orth in 

<i class="fa fa-tag" aria-hidden="true"></i>&nbsp;<a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>

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  <h2 id="2018-06-04">2018-06-04</h2>

<ul>
<li>Test the <a href="https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=560">DSpace 5.8 module upgrades from Atmire</a> (<a href="https://github.com/ilri/DSpace/pull/378">#378</a>)

<ul>
<li>There seems to be a problem with the CUA and L&amp;R versions in <code>pom.xml</code> because they are using SNAPSHOT and it doesn&rsquo;t build</li>
</ul></li>
<li>I added the new CCAFS Phase II Project Tag <code>PII-FP1_PACCA2</code> and merged it into the <code>5_x-prod</code> branch (<a href="https://github.com/ilri/DSpace/pull/379">#379</a>)</li>
<li>I proofed and tested the ILRI author corrections that Peter sent back to me this week:</li>
</ul>

<pre><code>$ ./fix-metadata-values.py -i /tmp/2018-05-30-Correct-660-authors.csv -db dspace -u dspace -p 'fuuu' -f dc.contributor.author -t correct -m 3 -n
</code></pre>

<ul>
<li>I think a sane proofing workflow in OpenRefine is to apply the custom text facets for check/delete/remove and illegal characters that I developed in <a href="/cgspace-notes/2018-03/">March, 2018</a></li>
<li>Time to index ~70,000 items on CGSpace:</li>
</ul>

<pre><code>$ time schedtool -D -e ionice -c2 -n7 nice -n19 [dspace]/bin/dspace index-discovery -b                                  

real    74m42.646s
user    8m5.056s
sys     2m7.289s
</code></pre>

<p></p>

<h2 id="2018-06-06">2018-06-06</h2>

<ul>
<li>It turns out that I needed to add a server block for <code>atmire.com-snapshots</code> to my Maven settings, so now the Atmire code builds</li>
<li>Now Maven and Ant run properly, but I&rsquo;m getting SQL migration errors in <code>dspace.log</code> after starting Tomcat</li>
<li>I&rsquo;ve updated my ticket on Atmire&rsquo;s bug tracker: <a href="https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=560">https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=560</a></li>
</ul>

<h2 id="2018-06-07">2018-06-07</h2>

<ul>
<li>Proofing 200 IITA records on DSpace Test for Sisay: <a href="https://dspacetest.cgiar.org/handle/10568/95391">IITA_Junel_06 (<sup>10568</sup>&frasl;<sub>95391</sub>)</a>

<ul>
<li>Mispelled authorship type: CGAIR single center should be: CGIAR single centre</li>
<li>I see some encoding errors in author affiliations, for example:</li>
<li>Universidade de SÆo Paulo</li>
<li>Institut National des Recherches Agricoles du B nin</li>
<li>Centre de Coop ration Internationale en Recherche Agronomique pour le D veloppement</li>
<li>Institut des Recherches Agricoles du B nin</li>
<li>Institut des Savannes, C te d&rsquo; Ivoire</li>
<li>Institut f r Pflanzenpathologie und Pflanzenschutz der Universit t, Germany</li>
<li>Projet de Gestion des Ressources Naturelles, B nin</li>
<li>Universit t Hannover</li>
<li>Universit F lix Houphouet-Boigny</li>
</ul></li>
<li>I uploaded fixes for all those now, but I will continue with the rest of the data later</li>
</ul>

  
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<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>

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Add notes for 2018-06-04 2018-06-05 06:31:29 +02:00			`<!DOCTYPE html>`
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			`Test the DSpace 5.8 module upgrades from Atmire (#378)`


			`There seems to be a problem with the CUA and L&R versions in pom.xml because they are using SNAPSHOT and it doesn’t build`

			`I added the new CCAFS Phase II Project Tag PII-FP1_PACCA2 and merged it into the 5_x-prod branch (#379)`
			`I proofed and tested the ILRI author corrections that Peter sent back to me this week:`


			`$ ./fix-metadata-values.py -i /tmp/2018-05-30-Correct-660-authors.csv -db dspace -u dspace -p 'fuuu' -f dc.contributor.author -t correct -m 3 -n`



			`I think a sane proofing workflow in OpenRefine is to apply the custom text facets for check/delete/remove and illegal characters that I developed in March, 2018`
Update notes for 2018-06-05 2018-06-06 08:05:37 +02:00			`Time to index ~70,000 items on CGSpace:`


			`$ time schedtool -D -e ionice -c2 -n7 nice -n19 [dspace]/bin/dspace index-discovery -b`

			`real 74m42.646s`
			`user 8m5.056s`
			`sys 2m7.289s`
Add notes for 2018-06-04 2018-06-05 06:31:29 +02:00

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Add notes for 2018-06-07 2018-06-07 18:17:51 +02:00			`<meta property="article:modified_time" content="2018-06-06T10:39:48-07:00"/>`
Add notes for 2018-06-04 2018-06-05 06:31:29 +02:00










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			`Test the DSpace 5.8 module upgrades from Atmire (#378)`


			`There seems to be a problem with the CUA and L&R versions in pom.xml because they are using SNAPSHOT and it doesn’t build`

			`I added the new CCAFS Phase II Project Tag PII-FP1_PACCA2 and merged it into the 5_x-prod branch (#379)`
			`I proofed and tested the ILRI author corrections that Peter sent back to me this week:`


			`$ ./fix-metadata-values.py -i /tmp/2018-05-30-Correct-660-authors.csv -db dspace -u dspace -p 'fuuu' -f dc.contributor.author -t correct -m 3 -n`



			`I think a sane proofing workflow in OpenRefine is to apply the custom text facets for check/delete/remove and illegal characters that I developed in March, 2018`
Update notes for 2018-06-05 2018-06-06 08:05:37 +02:00			`Time to index ~70,000 items on CGSpace:`


			`$ time schedtool -D -e ionice -c2 -n7 nice -n19 [dspace]/bin/dspace index-discovery -b`

			`real 74m42.646s`
			`user 8m5.056s`
			`sys 2m7.289s`
Add notes for 2018-06-04 2018-06-05 06:31:29 +02:00

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			`<article class="blog-post">`
			`<header>`
			`<h2 class="blog-post-title"><a href="https://alanorth.github.io/cgspace-notes/2018-06/">June, 2018</a></h2>`
			`<p class="blog-post-meta"><time datetime="2018-06-04T19:49:54-07:00">Mon Jun 04, 2018</time> by Alan Orth in`

			`<i class="fa fa-tag" aria-hidden="true"></i> <a href="/cgspace-notes/tags/notes" rel="tag">Notes</a>`

			`</p>`
			`</header>`
			`<h2 id="2018-06-04">2018-06-04</h2>`

			`<ul>`
			`<li>Test the <a href="https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=560">DSpace 5.8 module upgrades from Atmire</a> (<a href="https://github.com/ilri/DSpace/pull/378">#378</a>)`

			`<ul>`
			`<li>There seems to be a problem with the CUA and L&R versions in <code>pom.xml</code> because they are using SNAPSHOT and it doesn’t build</li>`
			`</ul></li>`
			`<li>I added the new CCAFS Phase II Project Tag <code>PII-FP1_PACCA2</code> and merged it into the <code>5_x-prod</code> branch (<a href="https://github.com/ilri/DSpace/pull/379">#379</a>)</li>`
			`<li>I proofed and tested the ILRI author corrections that Peter sent back to me this week:</li>`
			`</ul>`

			`<pre><code>$ ./fix-metadata-values.py -i /tmp/2018-05-30-Correct-660-authors.csv -db dspace -u dspace -p 'fuuu' -f dc.contributor.author -t correct -m 3 -n`
			`</code></pre>`

			`<ul>`
			`<li>I think a sane proofing workflow in OpenRefine is to apply the custom text facets for check/delete/remove and illegal characters that I developed in <a href="/cgspace-notes/2018-03/">March, 2018</a></li>`
Update notes for 2018-06-05 2018-06-06 08:05:37 +02:00			`<li>Time to index ~70,000 items on CGSpace:</li>`
Add notes for 2018-06-04 2018-06-05 06:31:29 +02:00			`</ul>`

Update notes for 2018-06-05 2018-06-06 08:05:37 +02:00			`<pre><code>$ time schedtool -D -e ionice -c2 -n7 nice -n19 [dspace]/bin/dspace index-discovery -b`

			`real 74m42.646s`
			`user 8m5.056s`
			`sys 2m7.289s`
			`</code></pre>`

Add notes for 2018-06-04 2018-06-05 06:31:29 +02:00			`<p></p>`

Update notes for 2018-06-06 2018-06-06 19:39:48 +02:00			`<h2 id="2018-06-06">2018-06-06</h2>`

			`<ul>`
			`<li>It turns out that I needed to add a server block for <code>atmire.com-snapshots</code> to my Maven settings, so now the Atmire code builds</li>`
			`<li>Now Maven and Ant run properly, but I’m getting SQL migration errors in <code>dspace.log</code> after starting Tomcat</li>`
			`<li>I’ve updated my ticket on Atmire’s bug tracker: <a href="https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=560">https://tracker.atmire.com/tickets-cgiar-ilri/view-ticket?id=560</a></li>`
			`</ul>`

Add notes for 2018-06-07 2018-06-07 18:17:51 +02:00			`<h2 id="2018-06-07">2018-06-07</h2>`

			`<ul>`
			`<li>Proofing 200 IITA records on DSpace Test for Sisay: <a href="https://dspacetest.cgiar.org/handle/10568/95391">IITA_Junel_06 (<sup>10568</sup>&frasl;<sub>95391</sub>)</a>`

			`<ul>`
			`<li>Mispelled authorship type: CGAIR single center should be: CGIAR single centre</li>`
			`<li>I see some encoding errors in author affiliations, for example:</li>`
			`<li>Universidade de SÆo Paulo</li>`
			`<li>Institut National des Recherches Agricoles du B nin</li>`
			`<li>Centre de Coop ration Internationale en Recherche Agronomique pour le D veloppement</li>`
			`<li>Institut des Recherches Agricoles du B nin</li>`
			`<li>Institut des Savannes, C te d’ Ivoire</li>`
			`<li>Institut f r Pflanzenpathologie und Pflanzenschutz der Universit t, Germany</li>`
			`<li>Projet de Gestion des Ressources Naturelles, B nin</li>`
			`<li>Universit t Hannover</li>`
			`<li>Universit F lix Houphouet-Boigny</li>`
			`</ul></li>`
			`<li>I uploaded fixes for all those now, but I will continue with the rest of the data later</li>`
			`</ul>`

Add notes for 2018-06-04 2018-06-05 06:31:29 +02:00



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			`<li><a href="/cgspace-notes/2018-06/">June, 2018</a></li>`

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			`<li><a href="/cgspace-notes/2018-04/">April, 2018</a></li>`

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			`<ol class="list-unstyled">`

			`<li><a href="https://cgspace.cgiar.org">CGSpace</a></li>`

			`<li><a href="https://dspacetest.cgiar.org">DSpace Test</a></li>`

			`<li><a href="https://github.com/ilri/DSpace">CGSpace @ GitHub</a></li>`

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