<li>Then extract the ID, DOI, journal, volume, issue, publisher, etc from the CGSpace dump and rename the <code>cg.identifier.doi[en_US]</code> to <code>doi</code> so we can join on it with the Crossref results file:</li>
</span></span><spanstyle="display:flex;"><span>$ csvjoin -c doi /tmp/2023-02-01-cgspace-doi-metadata.csv ~/Downloads/2023-02-01-crossref-results.csv > /tmp/2023-02-01-cgspace-crossref-check.csv
</span></span></code></pre></div><ul>
<li>And import into OpenRefine for analysis and cleaning</li>
<li>I just noticed that Crossref also has types, so we could use that in the future too!</li>
<li>I got a few corrections after examining manually, but I didn’t manage to identify any patterns that I could use to do any automatic matching or cleaning</li>
</ul>
<h2id="2023-02-05">2023-02-05</h2>
<ul>
<li>Normalize text lang attributes in PostgreSQL, run a quick Discovery index, and then export CGSpace to check Initiative mappings and countries/regions</li>
<li>Run all system updates on CGSpace (linode18) and reboot it</li>
</ul>
<h2id="2023-02-06">2023-02-06</h2>
<ul>
<li>Peter said that a new Initiative was approved last month so we need to add it to CGSpace: <code>Fragility, Conflict, and Migration</code></li>
<li>There is lots of discussion about the “issue date” versus “available date” with Enrico and IFPRI, after lots of feedback from the PRMS QA
<ul>
<li>I filed <ahref="https://github.com/AgriculturalSemantics/cg-core/issues/43">an issue on CG Core to propose using <code>dcterms.available</code> as an optional field to indicate the online date</a></li>
</ul>
</li>
</ul>
<h2id="2023-02-07">2023-02-07</h2>
<ul>
<li>IFPRI’s web developer Tony managed to get his Drupal harvester to have a useful user agent:</li>
<li>He also noticed that there is no pagination on POST requests to <code>/rest/items/find-by-metadata-field</code>, and that he needs to increase his timeout for requests that return 100+ results, ie:</li>
<li>I need to ask on the DSpace Slack about this POST pagination</li>
<li>Abenet and Udana noticed that the Handle server was not running
<ul>
<li>Looking in the <code>error.log</code> file I see that the service is complaining about a lock file being present</li>
<li>This is because Linode had to do emergency maintenance on the VM host this morning and the Handle server didn’t shut down properly</li>
</ul>
</li>
<li>I’m having an issue with <code>poetry update</code> so I spent some time debugging and filed <ahref="https://github.com/python-poetry/poetry/issues/7482">an issue</a></li>
<li>Proof and import nine items for the Digital Innovation Inititive for IFPRI
<ul>
<li>There were only some minor issues in the metadata</li>
<li>I also did a duplicate check with <code>check-duplicates.py</code> just in case</li>
</ul>
</li>
<li>I did some minor updates on csv-metadata-quality
<ul>
<li>First, to reduce warnings on non-SPDX licenses like “Copyrighted; all rights reserved” and “Other” since they are very common for us and I’m sick of seeing the warnings</li>
<li>Second, to skip whitespace and newline fixes on the abstract field since so many times they are intended</li>
</ul>
</li>
</ul>
<h2id="2023-02-08">2023-02-08</h2>
<ul>
<li>Make some edits to IFPRI records requested by Jawoo and Leigh</li>
<li>Help Alessandra upload a last minute report for SAPLING</li>
<li>Proof and upload twenty-seven IFPRI records to CGSpace
<ul>
<li>It’s a good thing I did a duplicate check because I found three duplicates!</li>
</ul>
</li>
<li>Export CGSpace to update Initiative mappings and country/region mappings
<li>I killed all locks that were more than a few hours old</li>
<li>Export CGSpace to update Initiative collection mappings</li>
<li>Discuss adding <code>dcterms.available</code> to the submission form
<ul>
<li>I also looked in the <code>dcterms.description</code> field on CGSpace and found ~1,500 items where the is an indication of an online published date</li>
<li>Using some facets in OpenRefine I narrowed down the ones mentioning “online” and then extracted the dates to a new column:</li>
<li>Then to handle formats like “2022-April-26” and “2021-Nov-11” I used some replacement GRELs (note the order so we don’t replace short patterns in longer strings prematurely):</li>
<li>Export CGSpace to do some metadata quality checks
<ul>
<li>I added CGIAR Trust Fund as a donor to some new Initiative outputs</li>
<li>I moved some abstracts from the description field</li>
<li>I moved some version information to the <code>cg.edition</code> field</li>
</ul>
</li>
</ul>
<h2id="2023-02-14">2023-02-14</h2>
<ul>
<li>The PRMS team in Colombia sent some questions about countries on CGSpace
<ul>
<li>I had to fix some, that were clearly wrong, but there is also a difference between CGSpace and MEL because we use mostly iso-codes, and MEL uses the UN M.49 list</li>
<li>Then I re-ran the country code tagger from cgspace-java-helpers, forcing the update on all items in the Initiatives community</li>
</ul>
</li>
<li>Remove Alliance research levers from <code>cg.contributor.crp</code> field after discussing with Daniel and Maria
<ul>
<li>This was a mistake on TIP’s part, and there is no direct mapping between research levers and CRPs</li>
</ul>
</li>
<li>I exported CGSpace to check Initiative collection mappings, regions, and licenses
<ul>
<li>Peter told me that all CGIAR blog posts for the Initiatives should be CC-BY-4.0, and I see the logo at the bottom in light gray!</li>
<li>I had previously missed that and removed some licenses for blog posts</li>
<li>I checked cgiar.org, ifpri.org, icarda.org, iwmi.cgiar.org, irri.org, etc and corrected a handful</li>
