- I exported the CCAFS and IITA communities, extracted just the country and region columns, then ran them through csv-metadata-quality to fix the regions
- Add a few more authors to my CSV with author names and ORCID identifiers and tag 283 items!
- Replace "East Asia" with "Eastern Asia" region on CGSpace (UN M.49 region)
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- CGSpace and PRMS information session with Enrico and a bunch of researchers
- I noticed some minor issues with SPDX licenses and AGROVOC terms in items submitted by TIP so I sent a message to Daniel from Alliance
- I startd a harvest on AReS since we've updated so much metadata recently
## 2022-12-02
- File some issues related to metadata on the MEL issue tracker
- [Only use "Open Access" or "Limited Access" access rights when publishing items on CGSpace](https://github.com/CodeObia/MEL/issues/11066)
- [Set the description when submitting bitstreams to CGSpace](https://github.com/CodeObia/MEL/issues/11067)
- [Some items have a Creative Commons license, but are Limited Access and bitstreams are locked](https://github.com/CodeObia/MEL/issues/11068)
- Out of the box they match 26.4%, but there are many institutions with multiple languages in the text value, as well as countries in parentheses so I think it could be higher
- If I replace the slashes and remove the countries at the end there are slightly more matches, around 29%:
localhost/dspacetest= ☘ \COPY (SELECT DISTINCT text_value as "cg.contributor.affiliation", count(*) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id = 211 GROUP BY text_value ORDER BY count DESC LIMIT 1000) to /tmp/2022-11-22-affiliations.csv;
- I realized we should actually check affiliations and sponsors, since those are stored in separate fields
- When I add those the matches go down a bit to 45%
- Oh man, I realized institutions like `Université d'Abomey Calavi` don't match in ROR because they are like this in the JSON:
```console
"name": "Universit\u00e9 d'Abomey-Calavi"
```
- So we likely match a bunch more than 50%...
- I exported a list of affiliations and donors from CGSpace for Peter to look over and send corrections
## 2022-12-05
- First day of PRMS technical workshop in Rome
- Last night I submitted a CSV import with changes to 1,500 Alliance items (adding regions) and it hadn't completed after twenty-four hours so I canceled it
- Not sure if there is some rollback that will happen or what state the database will be in, so I will wait a few hours to see what happens before trying to modify those items again
- I started it again a few hours later with a subset of the items and 4GB of RAM instead of 2
- It completed successfully...
## 2022-12-07
- I found a bug in my csv-metadata-quality script regarding the regions
- I was accidentally checking `cg.coverage.subregion` due to a sloppy regex
- This means I've added a few thousand UN M.49 regions to the `cg.coverage.subregion` field in the last few days
- I had to extract them from CGSpace and delete them using `delete-metadata-values.py`
- My [DSpace 7.x pull request to tell ImageMagick about the PDF CropBox](https://github.com/DSpace/DSpace/pull/8550) was merged
- After that there were still some poorly formatted ones that my script didn't fix, so perhaps these are new ones not in our list
- I dumped them and combined with the existing ones to resolve later:
```console
localhost/dspace= ☘ \COPY (SELECT dspace_object_id,text_value FROM metadatavalue WHERE metadata_field_id=247 AND text_value LIKE '%http%') to /tmp/orcid-formatting.txt;
- I made some minor changes to csv-metadata-quality
- I switched to using the SPDX license data as a JSON directly from SPDX, instead of via the now-deprecated spdx-license-list package on pypi
- I exported the Initiatives collection to tag missing regions
- I submitted an issue to MEL GitHub:
- [Set the description of bitstreams in the THUMBNAIL bundle to "IM Thumbnail" when submitting to CGSpace](https://github.com/CodeObia/MEL/issues/11084)
- Submit a pull request to [fix the Handle link in the Citizen Lab test URLs for Iran](https://github.com/citizenlab/test-lists/pull/1199)
- I had originally submitted this in 2018, but it seems someone updated the URL in 2020... hmmm
- I normalized the `text_lang` values on CGSpace again:
```console
dspace=# SELECT DISTINCT text_lang, count(text_lang) FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) GROUP BY text_lang ORDER BY count DESC;
text_lang | count
-----------+---------
en_US | 3050302
en | 618
| 605
fr | 2
vi | 2
es | 1
| 0
(7 rows)
dspace=# BEGIN;
BEGIN
dspace=# UPDATE metadatavalue SET text_lang='en_US' WHERE dspace_object_id IN (SELECT uuid FROM item) AND text_lang IN ('en', '', NULL);
UPDATE 1223
dspace=# COMMIT;
COMMIT
```
- I wrote an initial version of a script to map CGSpace items to Initiative collections based on their `cg.contributor.initiative` metadata
- I am still considering if I want to add a mode to *un-map* items that are mapped to collections, but do not have the corresponding metadata tag
## 2022-12-14
- Lots of work on PRMS related metadata issues with CGSpace
- We noticed that PRMS uses `cg.identifier.dataurl` for the FAIR score, but not `cg.identifier.url`
- We don't use these consistently for datasets in CGSpace so I decided to move them to the dataurl field, but we will also ask the PRMS team to consider the normal URL field, as there are commonly other external resources related to the knowledge product there
- I updated the `move-metadata-values.py` script to use the latest best practices from my other scripts and some of the helper functions from `util.py`
- Then I exported a list of text values pointing to Dataverse instances from `cg.identifier.url`:
```console
localhost/dspace= ☘ \COPY (SELECT text_value FROM metadatavalue WHERE dspace_object_id IN (SELECT uuid FROM item) AND metadata_field_id=219 AND (text_value LIKE '%persistentId%' OR text_value LIKE '%20.500.11766.1/%')) to /tmp/data.txt;
COPY 61
```
- Then I moved them to `cg.identifier.dataurl` on CGSpace:
