# CGSpace Notes
Documenting day-to-day work on the [CGSpace](https://cgspace.cgiar.org) repository.

## April, 2017

Sun Apr 02, 2017 by Alan Orth in Notes

## 2017-04-02

- Merge one change to CCAFS flagships that I had forgotten to remove last month (“MANAGING CLIMATE RISK”): https://github.com/ilri/DSpace/pull/317
- Quick proof-of-concept hack to add `dc.rights` to the input form, including some inline instructions/hints:

- Remove redundant/duplicate text in the DSpace submission license
- Testing the CMYK patch on a collection with 650 items:

    $ [dspace]/bin/dspace filter-media -f -i 10568/16498 -p "ImageMagick PDF Thumbnail" -v >& /tmp/filter-media-cmyk.txt

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## March, 2017

Wed Mar 01, 2017 by Alan Orth in Notes

## 2017-03-01

- Run the 279 CIAT author corrections on CGSpace

## 2017-03-02

- Skype with Michael and Peter, discussing moving the CGIAR Library to CGSpace
- CGIAR people possibly open to moving content, redirecting library.cgiar.org to CGSpace and letting CGSpace resolve their handles
- They might come in at the top level in one “CGIAR System” community, or with several communities
- I need to spend a bit of time looking at the multiple handle support in DSpace and see if new content can be minted in both handles, or just one?
- Need to send Peter and Michael some notes about this in a few days
- Also, need to consider talking to Atmire about hiring them to bring ORCiD metadata to REST / OAI
- Filed an issue on DSpace issue tracker for the `filter-media` bug that causes it to process JPGs even when limiting to the PDF thumbnail plugin: DS-3516
- Discovered that the ImageMagic `filter-media` plugin creates JPG thumbnails with the CMYK colorspace when the source PDF is using CMYK
- Interestingly, it seems DSpace 4.x’s thumbnails were sRGB, but forcing regeneration using DSpace 5.x’s ImageMagick plugin creates CMYK JPGs if the source PDF was CMYK (see 10568/51999):

    $ identify ~/Desktop/alc_contrastes_desafios.jpg
    /Users/aorth/Desktop/alc_contrastes_desafios.jpg JPEG 464x600 464x600+0+0 8-bit CMYK 168KB 0.000u 0:00.000

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## February, 2017

Tue Feb 07, 2017 by Alan Orth in Notes

## 2017-02-07

- An item was mapped twice erroneously again, so I had to remove one of the mappings manually:

    dspace=# select * from collection2item where item_id = '80278';
      id   | collection_id | item_id
    -------+---------------+---------
     92551 |           313 |   80278
     92550 |           313 |   80278
     90774 |          1051 |   80278
    (3 rows)
    dspace=# delete from collection2item where id = 92551 and item_id = 80278;
    DELETE 1

- Create issue on GitHub to track the addition of CCAFS Phase II project tags (#301)
- Looks like we’ll be using `cg.identifier.ccafsprojectpii` as the field name

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## January, 2017

Mon Jan 02, 2017 by Alan Orth in Notes

## 2017-01-02

- I checked to see if the Solr sharding task that is supposed to run on January 1st had run and saw there was an error
- I tested on DSpace Test as well and it doesn’t work there either
- I asked on the dspace-tech mailing list because it seems to be broken, and actually now I’m not sure if we’ve ever had the sharding task run successfully over all these years

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## December, 2016

Fri Dec 02, 2016 by Alan Orth in Notes

## 2016-12-02

- CGSpace was down for five hours in the morning while I was sleeping
- While looking in the logs for errors, I see tons of warnings about Atmire MQM:

    2016-12-02 03:00:32,352 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=CREATE, SubjectType=BUNDLE, SubjectID=70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632305, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")
    2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY_METADATA, SubjectType=BUNDLE, SubjectID =70316, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632309, dispatcher=1544803905, detail="dc.title", transactionID="TX157907838689377964651674089851855413607")
    2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=ITEM, SubjectID=80044, Object Type=BUNDLE, ObjectID=70316, TimeStamp=1480647632311, dispatcher=1544803905, detail="THUMBNAIL", transactionID="TX157907838689377964651674089851855413607")
    2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=ADD, SubjectType=BUNDLE, SubjectID=70316, Obje ctType=BITSTREAM, ObjectID=86715, TimeStamp=1480647632318, dispatcher=1544803905, detail="-1", transactionID="TX157907838689377964651674089851855413607")
    2016-12-02 03:00:32,353 WARN  com.atmire.metadataquality.batchedit.BatchEditConsumer @ BatchEditConsumer should not have been given this kind of Subject in an event, skipping: org.dspace.event.Event(eventType=MODIFY, SubjectType=ITEM, SubjectID=80044, ObjectType=(Unknown), ObjectID=-1, TimeStamp=1480647632351, dispatcher=1544803905, detail=[null], transactionID="TX157907838689377964651674089851855413607")

- I see thousands of them in the logs for the last few months, so it’s not related to the DSpace 5.5 upgrade
- I’ve raised a ticket with Atmire to ask
- Another worrying error from dspace.log is:

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## November, 2016

Tue Nov 01, 2016 by Alan Orth in Notes

## 2016-11-01

- Add `dc.type` to the output options for Atmire’s Listings and Reports module (#286)

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## October, 2016

Mon Oct 03, 2016 by Alan Orth in Notes

## 2016-10-03

- Testing adding ORCIDs to a CSV file for a single item to see if the author orders get messed up
- Need to test the following scenarios to see how author order is affected:
  - ORCIDs only
  - ORCIDs plus normal authors
- I exported a random item’s metadata as CSV, deleted all columns except id and collection, and made a new coloum called `ORCID:dc.contributor.author` with the following random ORCIDs from the ORCID registry:

    0000-0002-6115-0956||0000-0002-3812-8793||0000-0001-7462-405X

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## September, 2016

Thu Sep 01, 2016 by Alan Orth in Notes

## 2016-09-01

- Discuss helping CCAFS with some batch tagging of ORCID IDs for their authors
- Discuss how the migration of CGIAR’s Active Directory to a flat structure will break our LDAP groups in DSpace
- We had been using `DC=ILRI` to determine whether a user was ILRI or not
- It looks like we might be able to use OUs now, instead of DCs:

    $ ldapsearch -x -H ldaps://svcgroot2.cgiarad.org:3269/ -b "dc=cgiarad,dc=org" -D "admigration1@cgiarad.org" -W "(sAMAccountName=admigration1)"

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## August, 2016

Mon Aug 01, 2016 by Alan Orth in Notes

## 2016-08-01

- Add updated distribution license from Sisay (#259)
- Play with upgrading Mirage 2 dependencies in `bower.json` because most are several versions of out date
- Bootstrap is at 3.3.0 but upstream is at 3.3.7, and upgrading to anything beyond 3.3.1 breaks glyphicons and probably more
- bower stuff is a dead end, waste of time, too many issues
- Anything after Bootstrap 3.3.1 makes glyphicons disappear (HTTP 404 trying to access from incorrect path of `fonts`)
- Start working on DSpace 5.1 → 5.5 port:

    $ git checkout -b 55new 5_x-prod
    $ git reset --hard ilri/5_x-prod
    $ git rebase -i dspace-5.5

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## July, 2016

Fri Jul 01, 2016 by Alan Orth in Notes

## 2016-07-01

- Add `dc.description.sponsorship` to Discovery sidebar facets and make investors clickable in item view (#232)
- I think this query should find and replace all authors that have “,” at the end of their names:

    dspacetest=# update metadatavalue set text_value = regexp_replace(text_value, '(^.+?),$', '\1') where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
    UPDATE 95
    dspacetest=# select text_value from  metadatavalue where metadata_field_id=3 and resource_type_id=2 and text_value ~ '^.+?,$';
     text_value
    ------------
    (0 rows)

- In this case the select query was showing 95 results before the update

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